Analysis of interatomic Contacts of Structural Units in PDB entry:
3U5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U5O entry

There are 7 chains in PDB entry 3U5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 883ALA 1087
B
 ASP 883ALA 1087
C
 ASP 883ALA 1087
D
 ASP 883ALA 1087
E
 ASP 883ALA 1087
F
 ASP 883ALA 1087
G
 ASP 883SER 989
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 3U5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
943 948Right-handed alpha
Helix 2
2
A
959 976Right-handed alpha
Helix 3
3
A
979 983Right-handed 310
Helix 4
4
A
992 997Right-handed alpha
Helix 5
5
A
1002 1010Right-handed alpha
Helix 6
6
A
1020 1047Right-handed alpha
Helix 7
7
A
1061 1079Right-handed alpha
Helix 8
8
B
943 951Right-handed alpha
Helix 9
9
B
959 976Right-handed alpha
Helix 10
10
B
979 984Right-handed alpha
Helix 11
11
B
992 997Right-handed alpha
Helix 12
12
B
1002 1010Right-handed alpha
Helix 13
13
B
1020 1048Right-handed alpha
Helix 14
14
B
1061 1079Right-handed alpha
Helix 15
15
C
959 976Right-handed alpha
Helix 16
16
C
979 983Right-handed 310
Helix 17
17
C
992 997Right-handed alpha
Helix 18
18
C
1002 1010Right-handed alpha
Helix 19
19
C
1020 1047Right-handed alpha
Helix 20
20
C
1061 1079Right-handed alpha
Helix 21
21
D
943 948Right-handed 310
Helix 22
22
D
959 976Right-handed alpha
Helix 23
23
D
979 983Right-handed 310
Helix 24
24
D
992 997Right-handed alpha
Helix 25
25
D
1002 1010Right-handed alpha
Helix 26
26
D
1020 1048Right-handed alpha
Helix 27
27
D
1061 1078Right-handed alpha
Helix 28
28
E
946 950Right-handed 310
Helix 29
29
E
959 976Right-handed alpha
Helix 30
30
E
979 983Right-handed 310
Helix 31
31
E
992 997Right-handed alpha
Helix 32
32
E
1002 1010Right-handed alpha
Helix 33
33
E
1020 1047Right-handed alpha
Helix 34
34
E
1061 1079Right-handed alpha
Helix 35
35
F
943 948Right-handed alpha
Helix 36
36
F
959 976Right-handed alpha
Helix 37
37
F
978 983Right-handed 310
Helix 38
38
F
992 997Right-handed alpha
Helix 39
39
F
1002 1010Right-handed alpha
Helix 40
40
F
1020 1047Right-handed alpha
Helix 41
41
F
1061 1078Right-handed alpha
Helix 42
42
G
943 948Right-handed alpha
Helix 43
43
G
959 976Right-handed alpha
Helix 44
44
G
979 983Right-handed 310
Helix 45
45
G
992 997Right-handed alpha
Helix 46
46
G
1002 1010Right-handed alpha
Helix 47
47
G
1021 1046Right-handed alpha
Helix 48
48
G
1061 1079Right-handed alpha
Helix 49
49
H
945 950Right-handed alpha
Helix 50
50
H
959 976Right-handed alpha
Helix 51
51
H
979 984Right-handed alpha
Helix 52
52
H
992 997Right-handed alpha
Helix 53
53
H
1002 1010Right-handed alpha
Helix 54
54
H
1020 1047Right-handed alpha
Helix 55
55
H
1061 1079Right-handed alpha
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There are 8 sheets in PDB entry 3U5O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
908 909first strand
Strand 2
A
899 901anti-parallel
Strand 3
I
3 4anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
899 900first strand
Strand 2
J
3 4anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
908 909first strand
Strand 2
C
899 901anti-parallel
Strand 3
K
3 4anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
900 901first strand
Strand 2
D
908 909anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
908 909first strand
Strand 2
E
899 901anti-parallel
Strand 3
M
3 4anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
899 900first strand
Strand 2
N
3 4anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
908 909first strand
Strand 2
G
899 901anti-parallel
Strand 3
O
3 4anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
908 909first strand
Strand 2
H
899 901anti-parallel
Strand 3
P
3 4anti-parallel
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