Analysis of interatomic Contacts of Structural Units in PDB entry:
3U5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U5U entry

There are 2 chains in PDB entry 3U5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 13LYS 513
B
 ASP 13LYS 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3U5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
33 38Right-handed alpha
Helix 4
4
A
49 58Right-handed alpha
Helix 5
5
A
59 66Right-handed 310
Helix 6
6
A
73 89Right-handed alpha
Helix 7
7
A
98 103Right-handed alpha
Helix 8
8
A
107 111Right-handed 310
Helix 9
9
A
113 130Right-handed alpha
Helix 10
10
A
144 152Right-handed alpha
Helix 11
11
A
153 157Right-handed 310
Helix 12
12
A
158 175Right-handed alpha
Helix 13
13
A
186 196Right-handed alpha
Helix 14
14
A
237 261Right-handed alpha
Helix 15
15
A
261 266Right-handed alpha
Helix 16
16
A
285 298Right-handed alpha
Helix 17
17
A
300 305Right-handed alpha
Helix 18
18
A
313 321Right-handed alpha
Helix 19
19
A
322 324Right-handed 310
Helix 20
20
A
328 336Right-handed alpha
Helix 21
21
A
366 371Right-handed alpha
Helix 22
22
A
397 412Right-handed alpha
Helix 23
23
A
432 437Right-handed alpha
Helix 24
24
A
439 459Right-handed alpha
Helix 25
25
A
476 480Right-handed 310
Helix 26
26
A
501 512Right-handed alpha
Helix 27
27
B
13 17Right-handed 310
Helix 28
28
B
18 22Right-handed 310
Helix 29
29
B
33 38Right-handed alpha
Helix 30
30
B
49 58Right-handed alpha
Helix 31
31
B
59 66Right-handed 310
Helix 32
32
B
73 89Right-handed alpha
Helix 33
33
B
98 103Right-handed alpha
Helix 34
34
B
107 111Right-handed 310
Helix 35
35
B
113 130Right-handed alpha
Helix 36
36
B
144 152Right-handed alpha
Helix 37
37
B
153 157Right-handed 310
Helix 38
38
B
158 175Right-handed alpha
Helix 39
39
B
186 196Right-handed alpha
Helix 40
40
B
237 261Right-handed alpha
Helix 41
41
B
261 266Right-handed alpha
Helix 42
42
B
287 298Right-handed alpha
Helix 43
43
B
300 305Right-handed alpha
Helix 44
44
B
305 310Right-handed alpha
Helix 45
45
B
313 321Right-handed alpha
Helix 46
46
B
322 324Right-handed 310
Helix 47
47
B
328 336Right-handed alpha
Helix 48
48
B
366 371Right-handed alpha
Helix 49
49
B
397 411Right-handed alpha
Helix 50
50
B
432 437Right-handed alpha
Helix 51
51
B
439 459Right-handed alpha
Helix 52
52
B
476 480Right-handed 310
Helix 53
53
B
501 512Right-handed alpha
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There are 5 sheets in PDB entry 3U5U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
341 354anti-parallel
Strand 3
A
416 420parallel
Strand 4
A
463 467parallel
Strand 5
A
27 31parallel
Strand 6
A
92 96parallel
Strand 7
A
133 139parallel
Strand 8
A
180 185parallel
Strand 9
A
268 280parallel
Strand 10
A
341 354parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 490first strand
Strand 2
A
498 500anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
341 354anti-parallel
Strand 3
B
416 420parallel
Strand 4
B
463 469parallel
Strand 5
B
27 31parallel
Strand 6
B
92 96parallel
Strand 7
B
133 139parallel
Strand 8
B
181 185parallel
Strand 9
B
269 280parallel
Strand 10
B
341 354parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 379first strand
Strand 2
B
382 383anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 490first strand
Strand 2
B
498 500anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il