Analysis of interatomic Contacts of Structural Units in PDB entry:
3U5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U5Z entry

There are 5 chains in PDB entry 3U5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
SER 0LYS 319
C
SER 0LYS 319
D
SER 0LYS 319
E
ILE 2LYS 319
A
SER 2ASP 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are188 helices in PDB entry 3U5Z. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
26 40Right-handed alpha
Helix 2
2
B
55 67Right-handed alpha
Helix 3
3
B
77 79Right-handed 310
Helix 4
4
B
80 86Right-handed alpha
Helix 5
5
B
86 94Right-handed alpha
Helix 6
6
B
114 129Right-handed alpha
Helix 7
7
B
140 144Right-handed 310
Helix 8
8
B
145 152Right-handed alpha
Helix 9
9
B
161 184Right-handed alpha
Helix 10
10
B
190 201Right-handed alpha
Helix 11
11
B
203 214Right-handed alpha
Helix 12
12
B
221 230Right-handed alpha
Helix 13
13
B
235 244Right-handed alpha
Helix 14
14
B
247 258Right-handed alpha
Helix 15
15
B
260 276Right-handed alpha
Helix 16
16
B
277 295Right-handed alpha
Helix 17
17
B
300 316Right-handed alpha
Helix 18
18
C
26 40Right-handed alpha
Helix 19
19
C
55 67Right-handed alpha
Helix 20
20
C
77 79Right-handed 310
Helix 21
21
C
80 86Right-handed alpha
Helix 22
22
C
86 94Right-handed alpha
Helix 23
23
C
111 113Right-handed 310
Helix 24
24
C
114 128Right-handed alpha
Helix 25
25
C
140 144Right-handed 310
Helix 26
26
C
145 152Right-handed alpha
Helix 27
27
C
161 184Right-handed alpha
Helix 28
28
C
190 200Right-handed alpha
Helix 29
29
C
205 214Right-handed alpha
Helix 30
30
C
223 229Right-handed alpha
Helix 31
31
C
235 244Right-handed alpha
Helix 32
32
C
247 258Right-handed alpha
Helix 33
33
C
260 276Right-handed alpha
Helix 34
34
C
277 295Right-handed alpha
Helix 35
35
C
300 316Right-handed alpha
Helix 36
36
D
26 40Right-handed alpha
Helix 37
37
D
55 67Right-handed alpha
Helix 38
38
D
77 79Right-handed 310
Helix 39
39
D
80 86Right-handed alpha
Helix 40
40
D
86 94Right-handed alpha
Helix 41
41
D
111 113Right-handed 310
Helix 42
42
D
114 128Right-handed alpha
Helix 43
43
D
140 144Right-handed 310
Helix 44
44
D
145 152Right-handed alpha
Helix 45
45
D
161 184Right-handed alpha
Helix 46
46
D
190 200Right-handed alpha
Helix 47
47
D
203 214Right-handed alpha
Helix 48
48
D
223 229Right-handed alpha
Helix 49
49
D
235 244Right-handed alpha
Helix 50
50
D
247 258Right-handed alpha
Helix 51
51
D
260 276Right-handed alpha
Helix 52
52
D
277 295Right-handed alpha
Helix 53
53
D
300 316Right-handed alpha
Helix 54
54
E
10 15Right-handed alpha
Helix 55
55
E
26 38Right-handed alpha
Helix 56
56
E
55 66Right-handed alpha
Helix 57
57
E
80 86Right-handed alpha
Helix 58
58
E
86 93Right-handed alpha
Helix 59
59
E
113 122Right-handed alpha
Helix 60
60
E
140 144Right-handed 310
Helix 61
61
E
145 152Right-handed alpha
Helix 62
62
E
161 184Right-handed alpha
Helix 63
63
E
190 200Right-handed alpha
Helix 64
64
E
203 212Right-handed alpha
Helix 65
65
E
235 244Right-handed alpha
Helix 66
66
E
247 258Right-handed alpha
Helix 67
67
E
260 276Right-handed alpha
Helix 68
68
E
277 295Right-handed alpha
Helix 69
69
E
300 316Right-handed alpha
Helix 70
70
A
11 20Right-handed alpha
Helix 71
71
A
21 31Right-handed alpha
Helix 72
72
A
39 49Right-handed alpha
Helix 73
73
A
61 71Right-handed alpha
Helix 74
74
A
75 85Right-handed alpha
Helix 75
75
A
90 102Right-handed alpha
Helix 76
76
A
117 132Right-handed alpha
Helix 77
77
A
134 148Right-handed alpha
Helix 78
78
A
151 159Right-handed alpha
Helix 79
79
A
163 171Right-handed alpha
Helix 80
80
A
174 183Right-handed alpha
Helix 81
81
G
5004 5015Right-handed alpha
Helix 82
82
G
5056 5064Right-handed alpha
Helix 83
83
G
5065 5067Right-handed 310
Helix 84
84
G
5119 5134Right-handed alpha
Helix 85
85
G
5185 5187Right-handed 310
Helix 86
86
H
6004 6015Right-handed alpha
Helix 87
87
H
6056 6066Right-handed alpha
Helix 88
88
H
6119 6133Right-handed alpha
Helix 89
89
H
6185 6187Right-handed 310
Helix 90
90
F
7004 7018Right-handed alpha
Helix 91
91
F
7056 7065Right-handed alpha
Helix 92
92
F
7119 7133Right-handed alpha
Helix 93
93
F
7185 7187Right-handed 310
Helix 94
94
L
26 40Right-handed alpha
Helix 95
95
L
55 67Right-handed alpha
Helix 96
96
L
77 79Right-handed 310
Helix 97
97
L
80 86Right-handed alpha
Helix 98
98
L
86 94Right-handed alpha
Helix 99
99
L
114 129Right-handed alpha
Helix 100
100
L
140 144Right-handed 310
Helix 101
101
L
145 152Right-handed alpha
Helix 102
102
L
161 184Right-handed alpha
Helix 103
103
L
190 201Right-handed alpha
Helix 104
104
L
203 214Right-handed alpha
Helix 105
105
L
221 230Right-handed alpha
Helix 106
106
L
235 244Right-handed alpha
Helix 107
107
L
247 258Right-handed alpha
Helix 108
108
L
260 276Right-handed alpha
Helix 109
109
L
277 295Right-handed alpha
Helix 110
110
L
300 316Right-handed alpha
Helix 111
111
M
26 40Right-handed alpha
Helix 112
112
M
55 67Right-handed alpha
Helix 113
113
M
77 79Right-handed 310
Helix 114
114
M
80 86Right-handed alpha
Helix 115
115
M
86 94Right-handed alpha
Helix 116
116
M
111 113Right-handed 310
Helix 117
117
M
114 128Right-handed alpha
Helix 118
118
M
140 144Right-handed 310
Helix 119
119
M
145 152Right-handed alpha
Helix 120
120
M
161 184Right-handed alpha
Helix 121
121
M
190 200Right-handed alpha
Helix 122
122
M
203 214Right-handed alpha
Helix 123
123
M
223 229Right-handed alpha
Helix 124
124
M
235 244Right-handed alpha
Helix 125
125
M
247 258Right-handed alpha
Helix 126
126
M
260 276Right-handed alpha
Helix 127
127
M
277 295Right-handed alpha
Helix 128
128
M
300 316Right-handed alpha
Helix 129
129
N
26 40Right-handed alpha
Helix 130
130
N
55 67Right-handed alpha
Helix 131
131
N
77 79Right-handed 310
Helix 132
132
N
80 86Right-handed alpha
Helix 133
133
N
86 94Right-handed alpha
Helix 134
134
N
111 113Right-handed 310
Helix 135
135
N
114 128Right-handed alpha
Helix 136
136
N
140 144Right-handed 310
Helix 137
137
N
145 152Right-handed alpha
Helix 138
138
N
161 184Right-handed alpha
Helix 139
139
N
190 200Right-handed alpha
Helix 140
140
N
203 214Right-handed alpha
Helix 141
141
N
223 229Right-handed alpha
Helix 142
142
N
235 244Right-handed alpha
Helix 143
143
N
247 258Right-handed alpha
Helix 144
144
N
260 276Right-handed alpha
Helix 145
145
N
277 295Right-handed alpha
Helix 146
146
N
300 316Right-handed alpha
Helix 147
147
O
10 15Right-handed alpha
Helix 148
148
O
26 38Right-handed alpha
Helix 149
149
O
55 66Right-handed alpha
Helix 150
150
O
80 86Right-handed alpha
Helix 151
151
O
86 93Right-handed alpha
Helix 152
152
O
113 122Right-handed alpha
Helix 153
153
O
140 144Right-handed 310
Helix 154
154
O
145 152Right-handed alpha
Helix 155
155
O
161 184Right-handed alpha
Helix 156
156
O
190 200Right-handed alpha
Helix 157
157
O
203 212Right-handed alpha
Helix 158
158
O
235 244Right-handed alpha
Helix 159
159
O
247 258Right-handed alpha
Helix 160
160
O
260 276Right-handed alpha
Helix 161
161
O
277 295Right-handed alpha
Helix 162
162
O
300 316Right-handed alpha
Helix 163
163
K
11 20Right-handed alpha
Helix 164
164
K
21 30Right-handed alpha
Helix 165
165
K
31 33Right-handed 310
Helix 166
166
K
39 50Right-handed alpha
Helix 167
167
K
61 71Right-handed alpha
Helix 168
168
K
75 85Right-handed alpha
Helix 169
169
K
90 100Right-handed alpha
Helix 170
170
K
117 131Right-handed alpha
Helix 171
171
K
134 148Right-handed alpha
Helix 172
172
K
151 159Right-handed alpha
Helix 173
173
K
163 171Right-handed alpha
Helix 174
174
K
174 183Right-handed alpha
Helix 175
175
Q
5004 5016Right-handed alpha
Helix 176
176
Q
5056 5064Right-handed alpha
Helix 177
177
Q
5065 5067Right-handed 310
Helix 178
178
Q
5096 5100Right-handed 310
Helix 179
179
Q
5119 5134Right-handed alpha
Helix 180
180
Q
5185 5187Right-handed 310
Helix 181
181
R
6004 6016Right-handed alpha
Helix 182
182
R
6056 6067Right-handed alpha
Helix 183
183
R
6096 6100Right-handed 310
Helix 184
184
R
6119 6133Right-handed alpha
Helix 185
185
P
7004 7018Right-handed alpha
Helix 186
186
P
7056 7065Right-handed alpha
Helix 187
187
P
7096 7100Right-handed 310
Helix 188
188
P
7119 7134Right-handed alpha
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There are 35 sheets in PDB entry 3U5Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
70 75first strand
Strand 2
B
102 107parallel
Strand 3
B
132 138parallel
Strand 4
B
45 48parallel
Strand 5
B
153 156parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
186 187first strand
Strand 2
B
219 220parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
70 75first strand
Strand 2
C
102 107parallel
Strand 3
C
132 138parallel
Strand 4
C
45 48parallel
Strand 5
C
153 156parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
186 187first strand
Strand 2
C
219 220parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
70 75first strand
Strand 2
D
102 107parallel
Strand 3
D
132 138parallel
Strand 4
D
45 48parallel
Strand 5
D
153 156parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
186 187first strand
Strand 2
D
219 220parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
70 75first strand
Strand 2
E
102 107parallel
Strand 3
E
132 138parallel
Strand 4
E
45 48parallel
Strand 5
E
153 156parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
186 187first strand
Strand 2
E
219 220parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
5021 5023first strand
Strand 2
G
5052 5054anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
5026 5032first strand
Strand 2
G
5038 5048anti-parallel
Strand 3
G
5214 5219anti-parallel
Strand 4
G
5206 5210anti-parallel
Strand 5
G
5194 5199anti-parallel
Strand 6
G
5114 5118anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
5072 5075first strand
Strand 2
G
5081 5084anti-parallel
Strand 3
G
5088 5092anti-parallel
Strand 4
H
6165 6171anti-parallel
Strand 5
H
6146 6152anti-parallel
Strand 6
H
6137 6143anti-parallel
Strand 7
H
6178 6183anti-parallel
Strand 8
H
6225 6226anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
5225 5226first strand
Strand 2
G
5178 5183anti-parallel
Strand 3
G
5137 5143anti-parallel
Strand 4
G
5146 5152anti-parallel
Strand 5
G
5165 5171anti-parallel
Strand 6
F
7088 7092anti-parallel
Strand 7
F
7081 7084anti-parallel
Strand 8
F
7072 7075anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
6021 6023first strand
Strand 2
H
6052 6054anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
6028 6032first strand
Strand 2
H
6038 6043anti-parallel
Strand 3
H
6214 6219anti-parallel
Strand 4
H
6204 6211anti-parallel
Strand 5
H
6194 6201anti-parallel
Strand 6
H
6114 6118anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
6072 6075first strand
Strand 2
H
6081 6084anti-parallel
Strand 3
H
6088 6092anti-parallel
Strand 4
F
7165 7171anti-parallel
Strand 5
F
7146 7152anti-parallel
Strand 6
F
7137 7143anti-parallel
Strand 7
F
7178 7183anti-parallel
Strand 8
F
7225 7226anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
7022 7023first strand
Strand 2
F
7052 7053anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
7026 7029first strand
Strand 2
F
7038 7048anti-parallel
Strand 3
F
7215 7219anti-parallel
Strand 4
F
7205 7211anti-parallel
Strand 5
F
7194 7200anti-parallel
Strand 6
F
7114 7118anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
70 75first strand
Strand 2
L
102 107parallel
Strand 3
L
132 138parallel
Strand 4
L
45 48parallel
Strand 5
L
153 156parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
186 187first strand
Strand 2
L
219 220parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
70 75first strand
Strand 2
M
102 107parallel
Strand 3
M
132 138parallel
Strand 4
M
45 48parallel
Strand 5
M
153 156parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
186 187first strand
Strand 2
M
219 220parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
70 75first strand
Strand 2
N
102 107parallel
Strand 3
N
132 138parallel
Strand 4
N
45 48parallel
Strand 5
N
153 156parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
186 187first strand
Strand 2
N
219 220parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
70 75first strand
Strand 2
O
102 107parallel
Strand 3
O
132 138parallel
Strand 4
O
45 48parallel
Strand 5
O
153 156parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
186 187first strand
Strand 2
O
219 220parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
5021 5023first strand
Strand 2
Q
5052 5054anti-parallel
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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
5026 5032first strand
Strand 2
Q
5038 5048anti-parallel
Strand 3
Q
5214 5219anti-parallel
Strand 4
Q
5206 5210anti-parallel
Strand 5
Q
5194 5199anti-parallel
Strand 6
Q
5114 5118anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
5072 5075first strand
Strand 2
Q
5081 5084anti-parallel
Strand 3
Q
5089 5092anti-parallel
Strand 4
R
6165 6171anti-parallel
Strand 5
R
6146 6152anti-parallel
Strand 6
R
6137 6143anti-parallel
Strand 7
R
6178 6183anti-parallel
Strand 8
R
6225 6226anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
5225 5226first strand
Strand 2
Q
5178 5183anti-parallel
Strand 3
Q
5137 5143anti-parallel
Strand 4
Q
5146 5152anti-parallel
Strand 5
Q
5165 5171anti-parallel
Strand 6
P
7088 7092anti-parallel
Strand 7
P
7081 7084anti-parallel
Strand 8
P
7072 7075anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
6021 6023first strand
Strand 2
R
6052 6054anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
6029 6032first strand
Strand 2
R
6038 6042anti-parallel
Strand 3
R
6215 6218anti-parallel
Strand 4
R
6205 6211anti-parallel
Strand 5
R
6194 6200anti-parallel
Strand 6
R
6114 6118anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
6073 6075first strand
Strand 2
R
6081 6084anti-parallel
Strand 3
R
6089 6090anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
7021 7023first strand
Strand 2
P
7052 7054anti-parallel
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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
7028 7032first strand
Strand 2
P
7038 7043anti-parallel
Strand 3
P
7214 7218anti-parallel
Strand 4
P
7205 7210anti-parallel
Strand 5
P
7195 7200anti-parallel
Strand 6
P
7114 7117anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
7165 7168first strand
Strand 2
P
7146 7152anti-parallel
Strand 3
P
7137 7143anti-parallel
Strand 4
P
7179 7183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il