Analysis of interatomic Contacts of Structural Units in PDB entry:
3U60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3U60 entry

There are 5 chains in PDB entry 3U60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	LYS 319
C	SER 0	LYS 319
D	MET 1	LYS 319
E	ILE 2	LYS 319
I	T 7	T 9

There are100 helices in PDB entry 3U60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	26	40	Right-handed alpha
Helix 2	2	B	55	68	Right-handed alpha
Helix 3	3	B	77	79	Right-handed 310
Helix 4	4	B	80	86	Right-handed alpha
Helix 5	5	B	87	94	Right-handed alpha
Helix 6	6	B	111	113	Right-handed 310
Helix 7	7	B	114	128	Right-handed alpha
Helix 8	8	B	140	144	Right-handed 310
Helix 9	9	B	145	151	Right-handed alpha
Helix 10	10	B	161	184	Right-handed alpha
Helix 11	11	B	189	200	Right-handed alpha
Helix 12	12	B	203	214	Right-handed alpha
Helix 13	13	B	221	229	Right-handed alpha
Helix 14	14	B	235	244	Right-handed alpha
Helix 15	15	B	247	259	Right-handed alpha
Helix 16	16	B	260	276	Right-handed alpha
Helix 17	17	B	277	295	Right-handed alpha
Helix 18	18	B	300	316	Right-handed alpha
Helix 19	19	C	26	40	Right-handed alpha
Helix 20	20	C	55	68	Right-handed alpha
Helix 21	21	C	77	79	Right-handed 310
Helix 22	22	C	80	86	Right-handed alpha
Helix 23	23	C	86	94	Right-handed alpha
Helix 24	24	C	111	113	Right-handed 310
Helix 25	25	C	114	128	Right-handed alpha
Helix 26	26	C	140	144	Right-handed 310
Helix 27	27	C	145	151	Right-handed alpha
Helix 28	28	C	161	184	Right-handed alpha
Helix 29	29	C	189	200	Right-handed alpha
Helix 30	30	C	203	214	Right-handed alpha
Helix 31	31	C	221	229	Right-handed alpha
Helix 32	32	C	235	244	Right-handed alpha
Helix 33	33	C	247	259	Right-handed alpha
Helix 34	34	C	260	276	Right-handed alpha
Helix 35	35	C	277	295	Right-handed alpha
Helix 36	36	C	300	316	Right-handed alpha
Helix 37	37	D	26	40	Right-handed alpha
Helix 38	38	D	55	68	Right-handed alpha
Helix 39	39	D	77	79	Right-handed 310
Helix 40	40	D	80	86	Right-handed alpha
Helix 41	41	D	86	94	Right-handed alpha
Helix 42	42	D	111	113	Right-handed 310
Helix 43	43	D	114	128	Right-handed alpha
Helix 44	44	D	140	144	Right-handed 310
Helix 45	45	D	145	151	Right-handed alpha
Helix 46	46	D	161	184	Right-handed alpha
Helix 47	47	D	189	200	Right-handed alpha
Helix 48	48	D	203	214	Right-handed alpha
Helix 49	49	D	221	229	Right-handed alpha
Helix 50	50	D	235	244	Right-handed alpha
Helix 51	51	D	247	259	Right-handed alpha
Helix 52	52	D	260	276	Right-handed alpha
Helix 53	53	D	277	295	Right-handed alpha
Helix 54	54	D	300	316	Right-handed alpha
Helix 55	55	E	10	15	Right-handed alpha
Helix 56	56	E	26	40	Right-handed alpha
Helix 57	57	E	55	68	Right-handed alpha
Helix 58	58	E	77	79	Right-handed 310
Helix 59	59	E	80	86	Right-handed alpha
Helix 60	60	E	86	94	Right-handed alpha
Helix 61	61	E	111	113	Right-handed 310
Helix 62	62	E	114	128	Right-handed alpha
Helix 63	63	E	140	144	Right-handed 310
Helix 64	64	E	145	151	Right-handed alpha
Helix 65	65	E	161	184	Right-handed alpha
Helix 66	66	E	189	200	Right-handed alpha
Helix 67	67	E	203	214	Right-handed alpha
Helix 68	68	E	215	217	Right-handed 310
Helix 69	69	E	235	244	Right-handed alpha
Helix 70	70	E	247	259	Right-handed alpha
Helix 71	71	E	260	276	Right-handed alpha
Helix 72	72	E	277	295	Right-handed alpha
Helix 73	73	E	300	316	Right-handed alpha
Helix 74	74	A	11	19	Right-handed alpha
Helix 75	75	A	21	31	Right-handed alpha
Helix 76	76	A	40	50	Right-handed alpha
Helix 77	77	A	61	70	Right-handed alpha
Helix 78	78	A	75	85	Right-handed alpha
Helix 79	79	A	90	100	Right-handed alpha
Helix 80	80	A	117	131	Right-handed alpha
Helix 81	81	A	134	147	Right-handed alpha
Helix 82	82	A	150	159	Right-handed alpha
Helix 83	83	A	163	168	Right-handed alpha
Helix 84	84	A	174	183	Right-handed alpha
Helix 85	85	G	5004	5016	Right-handed alpha
Helix 86	86	G	5056	5064	Right-handed alpha
Helix 87	87	G	5065	5067	Right-handed 310
Helix 88	88	G	5096	5100	Right-handed 310
Helix 89	89	G	5119	5134	Right-handed alpha
Helix 90	90	G	5153	5158	Right-handed alpha
Helix 91	91	G	5185	5187	Right-handed 310
Helix 92	92	H	6008	6013	Right-handed alpha
Helix 93	93	H	6059	6063	Right-handed 310
Helix 94	94	H	6096	6100	Right-handed 310
Helix 95	95	H	6119	6133	Right-handed alpha
Helix 96	96	H	6185	6187	Right-handed 310
Helix 97	97	F	7004	7018	Right-handed alpha
Helix 98	98	F	7056	7065	Right-handed alpha
Helix 99	99	F	7096	7100	Right-handed 310
Helix 100	100	F	7119	7133	Right-handed alpha

There are 19 sheets in PDB entry 3U60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	75	first strand
Strand 2	B	102	107	parallel
Strand 3	B	132	138	parallel
Strand 4	B	45	48	parallel
Strand 5	B	153	156	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	219	220	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	75	first strand
Strand 2	C	102	107	parallel
Strand 3	C	132	138	parallel
Strand 4	C	45	48	parallel
Strand 5	C	153	156	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	219	220	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	75	first strand
Strand 2	D	102	107	parallel
Strand 3	D	132	138	parallel
Strand 4	D	45	48	parallel
Strand 5	D	153	156	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	219	220	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	75	first strand
Strand 2	E	102	107	parallel
Strand 3	E	132	138	parallel
Strand 4	E	45	48	parallel
Strand 5	E	153	156	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	219	220	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5021	5023	first strand
Strand 2	G	5052	5054	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5026	5032	first strand
Strand 2	G	5038	5048	anti-parallel
Strand 3	G	5214	5219	anti-parallel
Strand 4	G	5206	5210	anti-parallel
Strand 5	G	5194	5199	anti-parallel
Strand 6	G	5114	5118	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5072	5075	first strand
Strand 2	G	5081	5084	anti-parallel
Strand 3	G	5088	5092	anti-parallel
Strand 4	H	6165	6171	anti-parallel
Strand 5	H	6146	6152	anti-parallel
Strand 6	H	6137	6143	anti-parallel
Strand 7	H	6178	6183	anti-parallel
Strand 8	H	6225	6226	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5165	5171	first strand
Strand 2	G	5146	5152	anti-parallel
Strand 3	G	5137	5143	anti-parallel
Strand 4	G	5178	5183	anti-parallel
Strand 5	G	5225	5226	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6021	6023	first strand
Strand 2	H	6052	6054	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6029	6032	first strand
Strand 2	H	6038	6042	anti-parallel
Strand 3	H	6215	6218	anti-parallel
Strand 4	H	6204	6211	anti-parallel
Strand 5	H	6194	6201	anti-parallel
Strand 6	H	6114	6118	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6072	6075	first strand
Strand 2	H	6081	6084	anti-parallel
Strand 3	H	6089	6090	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7021	7023	first strand
Strand 2	F	7052	7054	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7026	7032	first strand
Strand 2	F	7039	7048	anti-parallel
Strand 3	F	7214	7217	anti-parallel
Strand 4	F	7205	7210	anti-parallel
Strand 5	F	7195	7200	anti-parallel
Strand 6	F	7114	7117	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7072	7075	first strand
Strand 2	F	7081	7084	anti-parallel
Strand 3	F	7089	7092	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7165	7171	first strand
Strand 2	F	7146	7151	anti-parallel
Strand 3	F	7137	7143	anti-parallel
Strand 4	F	7179	7183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3U60

Analysis of interatomic Contacts of Structural Units in PDB entry:
3U60