Analysis of interatomic Contacts of Structural Units in PDB entry:
3U62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U62 entry

There is 1 chain in PDB entry 3U62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3U62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
38 40Right-handed 310
Helix 3
3
A
41 53Right-handed alpha
Helix 4
4
A
64 70Right-handed 310
Helix 5
5
A
73 80Right-handed alpha
Helix 6
6
A
93 102Right-handed alpha
Helix 7
7
A
117 130Right-handed alpha
Helix 8
8
A
141 147Right-handed alpha
Helix 9
9
A
159 166Right-handed alpha
Helix 10
10
A
186 191Right-handed alpha
Helix 11
11
A
204 214Right-handed alpha
Helix 12
12
A
221 236Right-handed alpha
Helix 13
13
A
240 249Right-handed alpha
Helix 14
14
A
250 253Right-handed 310
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There are 2 sheets in PDB entry 3U62. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
2 7parallel
Strand 3
A
55 58parallel
Strand 4
A
84 86anti-parallel
Strand 5
A
89 91anti-parallel
Strand 6
A
71 72parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
135 139parallel
Strand 3
A
111 114parallel
Strand 4
A
169 172parallel
Strand 5
A
195 198parallel
Strand 6
A
217 219parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il