Analysis of interatomic Contacts of Structural Units in PDB entry:
3U84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U84 entry

There are 2 chains in PDB entry 3U84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 608
B
 GLY 2ALA 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3U84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 9Right-handed alpha
Helix 2
2
A
15 28Right-handed alpha
Helix 3
3
A
33 49Right-handed alpha
Helix 4
4
A
82 101Right-handed alpha
Helix 5
5
A
114 129Right-handed alpha
Helix 6
6
A
142 149Right-handed alpha
Helix 7
7
A
153 167Right-handed alpha
Helix 8
8
A
187 191Right-handed 310
Helix 9
9
A
203 207Right-handed 310
Helix 10
10
A
211 217Right-handed alpha
Helix 11
11
A
219 226Right-handed 310
Helix 12
12
A
231 242Right-handed alpha
Helix 13
13
A
253 270Right-handed alpha
Helix 14
14
A
276 290Right-handed alpha
Helix 15
15
A
297 313Right-handed alpha
Helix 16
16
A
318 331Right-handed alpha
Helix 17
17
A
333 349Right-handed alpha
Helix 18
18
A
354 356Right-handed 310
Helix 19
19
A
357 370Right-handed alpha
Helix 20
20
A
370 385Right-handed alpha
Helix 21
21
A
402 405Right-handed 310
Helix 22
22
A
406 425Right-handed alpha
Helix 23
23
A
433 446Right-handed alpha
Helix 24
24
A
448 453Right-handed alpha
Helix 25
25
A
555 561Right-handed alpha
Helix 26
26
A
561 567Right-handed alpha
Helix 27
27
A
571 579Right-handed alpha
Helix 28
28
A
597 608Right-handed alpha
Helix 29
29
B
4 9Right-handed alpha
Helix 30
30
B
15 28Right-handed alpha
Helix 31
31
B
33 50Right-handed alpha
Helix 32
32
B
82 101Right-handed alpha
Helix 33
33
B
102 106Right-handed 310
Helix 34
34
B
108 112Right-handed 310
Helix 35
35
B
114 127Right-handed alpha
Helix 36
36
B
142 149Right-handed alpha
Helix 37
37
B
153 169Right-handed alpha
Helix 38
38
B
211 217Right-handed alpha
Helix 39
39
B
219 226Right-handed 310
Helix 40
40
B
231 243Right-handed alpha
Helix 41
41
B
253 270Right-handed alpha
Helix 42
42
B
276 290Right-handed alpha
Helix 43
43
B
297 314Right-handed alpha
Helix 44
44
B
318 331Right-handed alpha
Helix 45
45
B
333 349Right-handed alpha
Helix 46
46
B
354 356Right-handed 310
Helix 47
47
B
357 370Right-handed alpha
Helix 48
48
B
370 384Right-handed alpha
Helix 49
49
B
402 405Right-handed 310
Helix 50
50
B
406 425Right-handed alpha
Helix 51
51
B
433 445Right-handed alpha
Helix 52
52
B
448 453Right-handed alpha
Helix 53
53
B
555 560Right-handed alpha
Helix 54
54
B
571 579Right-handed alpha
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There are 5 sheets in PDB entry 3U84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
75 79anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
182 186anti-parallel
Strand 3
A
174 177anti-parallel
Strand 4
A
228 229anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 66first strand
Strand 2
B
76 79anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
182 186anti-parallel
Strand 3
B
174 177anti-parallel
Strand 4
B
228 229anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 458first strand
Strand 2
B
550 552parallel
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