Analysis of interatomic Contacts of Structural Units in PDB entry:
3U8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U8L entry

There are 7 chains in PDB entry 3U8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLY 205
B
 LEU 1GLY 205
C
 LEU 1GLY 205
D
 LEU 1GLY 205
E
 LEU 1ARG 206
F
 LEU 1GLY 205
G
 LEU 1LYS 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3U8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
61 64Right-handed 310
Helix 3
3
A
79 81Right-handed 310
Helix 4
4
B
2 14Right-handed alpha
Helix 5
5
B
61 64Right-handed 310
Helix 6
6
B
79 81Right-handed 310
Helix 7
7
B
160 165Right-handed 310
Helix 8
8
C
2 13Right-handed alpha
Helix 9
9
C
61 64Right-handed 310
Helix 10
10
C
79 81Right-handed 310
Helix 11
11
D
2 14Right-handed alpha
Helix 12
12
D
61 64Right-handed 310
Helix 13
13
D
79 81Right-handed 310
Helix 14
14
E
2 14Right-handed alpha
Helix 15
15
E
61 64Right-handed 310
Helix 16
16
E
79 81Right-handed 310
Helix 17
17
F
2 14Right-handed alpha
Helix 18
18
F
61 64Right-handed 310
Helix 19
19
F
79 81Right-handed 310
Helix 20
20
G
2 14Right-handed alpha
Helix 21
21
G
61 64Right-handed 310
Helix 22
22
G
79 81Right-handed 310
Helix 23
23
H
2 14Right-handed alpha
Helix 24
24
H
61 64Right-handed 310
Helix 25
25
H
79 81Right-handed 310
Helix 26
26
I
2 14Right-handed alpha
Helix 27
27
I
61 64Right-handed 310
Helix 28
28
I
79 81Right-handed 310
Helix 29
29
J
2 13Right-handed alpha
Helix 30
30
J
61 64Right-handed 310
Helix 31
31
J
79 81Right-handed 310
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There are 30 sheets in PDB entry 3U8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
102 106anti-parallel
Strand 3
A
110 113anti-parallel
Strand 4
A
47 59anti-parallel
Strand 5
A
116 122anti-parallel
Strand 6
A
96 97anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
102 106anti-parallel
Strand 3
A
110 113anti-parallel
Strand 4
A
47 59anti-parallel
Strand 5
A
27 42anti-parallel
Strand 6
A
150 154parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
134 142anti-parallel
Strand 3
A
192 203anti-parallel
Strand 4
A
171 183anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
110 113anti-parallel
Strand 4
B
47 59anti-parallel
Strand 5
B
116 122anti-parallel
Strand 6
B
96 97anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
110 113anti-parallel
Strand 4
B
47 59anti-parallel
Strand 5
B
27 42anti-parallel
Strand 6
B
150 154parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
134 142anti-parallel
Strand 3
B
191 203anti-parallel
Strand 4
B
171 184anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 77first strand
Strand 2
C
102 106anti-parallel
Strand 3
C
110 113anti-parallel
Strand 4
C
47 59anti-parallel
Strand 5
C
116 122anti-parallel
Strand 6
C
96 97anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 77first strand
Strand 2
C
102 106anti-parallel
Strand 3
C
110 113anti-parallel
Strand 4
C
47 59anti-parallel
Strand 5
C
27 42anti-parallel
Strand 6
C
150 153parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 88first strand
Strand 2
C
134 142anti-parallel
Strand 3
C
192 203anti-parallel
Strand 4
C
171 183anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 77first strand
Strand 2
D
102 106anti-parallel
Strand 3
D
110 113anti-parallel
Strand 4
D
47 59anti-parallel
Strand 5
D
116 122anti-parallel
Strand 6
D
96 97anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 77first strand
Strand 2
D
102 106anti-parallel
Strand 3
D
110 113anti-parallel
Strand 4
D
47 59anti-parallel
Strand 5
D
27 42anti-parallel
Strand 6
D
150 153parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 88first strand
Strand 2
D
134 142anti-parallel
Strand 3
D
192 203anti-parallel
Strand 4
D
171 183anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
73 77first strand
Strand 2
E
102 106anti-parallel
Strand 3
E
110 113anti-parallel
Strand 4
E
47 59anti-parallel
Strand 5
E
116 122anti-parallel
Strand 6
E
96 97anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
73 77first strand
Strand 2
E
102 106anti-parallel
Strand 3
E
110 113anti-parallel
Strand 4
E
47 59anti-parallel
Strand 5
E
27 42anti-parallel
Strand 6
E
150 153parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 88first strand
Strand 2
E
134 142anti-parallel
Strand 3
E
191 203anti-parallel
Strand 4
E
171 184anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
73 77first strand
Strand 2
F
102 106anti-parallel
Strand 3
F
110 113anti-parallel
Strand 4
F
47 59anti-parallel
Strand 5
F
116 122anti-parallel
Strand 6
F
96 97anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
73 77first strand
Strand 2
F
102 106anti-parallel
Strand 3
F
110 113anti-parallel
Strand 4
F
47 59anti-parallel
Strand 5
F
27 42anti-parallel
Strand 6
F
150 153parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
86 88first strand
Strand 2
F
134 142anti-parallel
Strand 3
F
191 203anti-parallel
Strand 4
F
171 184anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
73 77first strand
Strand 2
G
102 106anti-parallel
Strand 3
G
110 113anti-parallel
Strand 4
G
47 59anti-parallel
Strand 5
G
116 122anti-parallel
Strand 6
G
96 97anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
73 77first strand
Strand 2
G
102 106anti-parallel
Strand 3
G
110 113anti-parallel
Strand 4
G
47 59anti-parallel
Strand 5
G
27 42anti-parallel
Strand 6
G
150 154parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
86 88first strand
Strand 2
G
134 142anti-parallel
Strand 3
G
192 203anti-parallel
Strand 4
G
171 183anti-parallel
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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
73 77first strand
Strand 2
H
102 106anti-parallel
Strand 3
H
110 113anti-parallel
Strand 4
H
47 59anti-parallel
Strand 5
H
116 122anti-parallel
Strand 6
H
96 97anti-parallel
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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
73 77first strand
Strand 2
H
102 106anti-parallel
Strand 3
H
110 113anti-parallel
Strand 4
H
47 59anti-parallel
Strand 5
H
27 42anti-parallel
Strand 6
H
150 154parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
86 88first strand
Strand 2
H
134 142anti-parallel
Strand 3
H
191 203anti-parallel
Strand 4
H
171 184anti-parallel
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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
73 77first strand
Strand 2
I
102 106anti-parallel
Strand 3
I
110 113anti-parallel
Strand 4
I
47 59anti-parallel
Strand 5
I
116 122anti-parallel
Strand 6
I
96 97anti-parallel
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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
73 77first strand
Strand 2
I
102 106anti-parallel
Strand 3
I
110 113anti-parallel
Strand 4
I
47 59anti-parallel
Strand 5
I
27 42anti-parallel
Strand 6
I
150 154parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
86 88first strand
Strand 2
I
134 142anti-parallel
Strand 3
I
192 203anti-parallel
Strand 4
I
171 183anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
73 77first strand
Strand 2
J
102 106anti-parallel
Strand 3
J
110 113anti-parallel
Strand 4
J
47 59anti-parallel
Strand 5
J
116 122anti-parallel
Strand 6
J
96 97anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
73 77first strand
Strand 2
J
102 106anti-parallel
Strand 3
J
110 113anti-parallel
Strand 4
J
47 59anti-parallel
Strand 5
J
27 42anti-parallel
Strand 6
J
150 154parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
86 88first strand
Strand 2
J
134 142anti-parallel
Strand 3
J
191 203anti-parallel
Strand 4
J
171 184anti-parallel
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