Analysis of interatomic Contacts of Structural Units in PDB entry:
3U8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U8P entry

There are 6 chains in PDB entry 3U8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 174
A
 VAL 176LEU 339
B
 LYS 3LEU 174
B
 VAL 176THR 338
C
 LYS 3LEU 174
C
 VAL 176THR 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3U8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 9Right-handed 310
Helix 2
2
A
42 62Right-handed alpha
Helix 3
3
A
64 83Right-handed alpha
Helix 4
4
A
87 91Right-handed 310
Helix 5
5
A
97 123Right-handed alpha
Helix 6
6
A
125 135Right-handed alpha
Helix 7
7
A
135 148Right-handed alpha
Helix 8
8
A
166 171Right-handed 310
Helix 9
9
A
176 180Right-handed 310
Helix 10
10
A
183 189Right-handed 310
Helix 11
11
A
190 195Right-handed alpha
Helix 12
12
A
264 267Right-handed 310
Helix 13
13
B
3 9Right-handed 310
Helix 14
14
B
43 62Right-handed alpha
Helix 15
15
B
64 83Right-handed alpha
Helix 16
16
B
87 93Right-handed 310
Helix 17
17
B
97 123Right-handed alpha
Helix 18
18
B
125 135Right-handed alpha
Helix 19
19
B
135 148Right-handed alpha
Helix 20
20
B
166 171Right-handed 310
Helix 21
21
B
176 180Right-handed 310
Helix 22
22
B
183 189Right-handed 310
Helix 23
23
B
190 195Right-handed alpha
Helix 24
24
B
264 267Right-handed 310
Helix 25
25
C
3 8Right-handed 310
Helix 26
26
C
42 62Right-handed alpha
Helix 27
27
C
64 83Right-handed alpha
Helix 28
28
C
87 91Right-handed 310
Helix 29
29
C
97 122Right-handed alpha
Helix 30
30
C
125 135Right-handed alpha
Helix 31
31
C
135 148Right-handed alpha
Helix 32
32
C
166 171Right-handed alpha
Helix 33
33
C
176 180Right-handed 310
Helix 34
34
C
183 189Right-handed 310
Helix 35
35
C
190 195Right-handed alpha
Helix 36
36
C
264 267Right-handed 310
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There are 3 sheets in PDB entry 3U8P. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
25 35anti-parallel
Strand 3
A
152 158anti-parallel
Strand 4
A
325 335anti-parallel
Strand 5
A
307 316anti-parallel
Strand 6
A
256 263anti-parallel
Strand 7
A
268 278anti-parallel
Strand 8
A
284 295anti-parallel
Strand 9
A
200 208anti-parallel
Strand 10
A
213 223anti-parallel
Strand 11
A
226 236anti-parallel
Strand 12
A
12 22parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
151 158anti-parallel
Strand 4
B
325 335anti-parallel
Strand 5
B
307 316anti-parallel
Strand 6
B
257 263anti-parallel
Strand 7
B
268 278anti-parallel
Strand 8
B
284 295anti-parallel
Strand 9
B
200 208anti-parallel
Strand 10
B
213 223anti-parallel
Strand 11
B
226 236anti-parallel
Strand 12
B
12 22parallel
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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 22first strand
Strand 2
C
25 36anti-parallel
Strand 3
C
151 158anti-parallel
Strand 4
C
325 335anti-parallel
Strand 5
C
307 316anti-parallel
Strand 6
C
256 263anti-parallel
Strand 7
C
268 278anti-parallel
Strand 8
C
284 295anti-parallel
Strand 9
C
200 208anti-parallel
Strand 10
C
213 223anti-parallel
Strand 11
C
226 236anti-parallel
Strand 12
C
12 22parallel
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