Analysis of interatomic Contacts of Structural Units in PDB entry:
3U8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U8U entry

There are 6 chains in PDB entry 3U8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 44LEU 318
B
 LEU 44LEU 318
C
 LEU 44LEU 318
D
 LEU 44LEU 318
E
 LEU 44LEU 318
F
 LEU 44LEU 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 3U8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 78Right-handed alpha
Helix 2
2
A
79 88Right-handed alpha
Helix 3
3
A
105 110Right-handed alpha
Helix 4
4
A
148 152Right-handed 310
Helix 5
5
A
176 180Right-handed 310
Helix 6
6
A
181 201Right-handed alpha
Helix 7
7
A
216 220Right-handed 310
Helix 8
8
A
223 227Right-handed 310
Helix 9
9
A
233 247Right-handed alpha
Helix 10
10
A
252 257Right-handed alpha
Helix 11
11
A
269 277Right-handed 310
Helix 12
12
A
289 293Right-handed 310
Helix 13
13
B
71 78Right-handed alpha
Helix 14
14
B
79 88Right-handed alpha
Helix 15
15
B
100 104Right-handed 310
Helix 16
16
B
105 109Right-handed 310
Helix 17
17
B
125 129Right-handed 310
Helix 18
18
B
148 152Right-handed 310
Helix 19
19
B
176 180Right-handed 310
Helix 20
20
B
181 203Right-handed alpha
Helix 21
21
B
216 220Right-handed 310
Helix 22
22
B
223 227Right-handed 310
Helix 23
23
B
233 247Right-handed alpha
Helix 24
24
B
252 257Right-handed alpha
Helix 25
25
B
269 271Right-handed 310
Helix 26
26
B
272 277Right-handed alpha
Helix 27
27
B
289 293Right-handed 310
Helix 28
28
C
71 78Right-handed alpha
Helix 29
29
C
79 88Right-handed alpha
Helix 30
30
C
100 104Right-handed 310
Helix 31
31
C
105 110Right-handed alpha
Helix 32
32
C
148 152Right-handed 310
Helix 33
33
C
176 180Right-handed 310
Helix 34
34
C
181 201Right-handed alpha
Helix 35
35
C
216 220Right-handed 310
Helix 36
36
C
223 227Right-handed 310
Helix 37
37
C
233 247Right-handed alpha
Helix 38
38
C
252 257Right-handed alpha
Helix 39
39
C
269 273Right-handed 310
Helix 40
40
C
289 293Right-handed 310
Helix 41
41
D
71 78Right-handed alpha
Helix 42
42
D
79 88Right-handed alpha
Helix 43
43
D
105 109Right-handed 310
Helix 44
44
D
176 180Right-handed 310
Helix 45
45
D
181 201Right-handed alpha
Helix 46
46
D
216 220Right-handed 310
Helix 47
47
D
223 227Right-handed 310
Helix 48
48
D
233 247Right-handed alpha
Helix 49
49
D
252 257Right-handed alpha
Helix 50
50
D
269 277Right-handed 310
Helix 51
51
D
289 293Right-handed 310
Helix 52
52
E
71 78Right-handed alpha
Helix 53
53
E
79 88Right-handed alpha
Helix 54
54
E
100 104Right-handed 310
Helix 55
55
E
105 109Right-handed 310
Helix 56
56
E
148 152Right-handed 310
Helix 57
57
E
176 180Right-handed 310
Helix 58
58
E
181 203Right-handed alpha
Helix 59
59
E
216 220Right-handed 310
Helix 60
60
E
223 227Right-handed 310
Helix 61
61
E
233 247Right-handed alpha
Helix 62
62
E
252 257Right-handed alpha
Helix 63
63
E
269 277Right-handed 310
Helix 64
64
E
290 293Right-handed 310
Helix 65
65
F
71 78Right-handed alpha
Helix 66
66
F
79 88Right-handed alpha
Helix 67
67
F
100 104Right-handed 310
Helix 68
68
F
105 109Right-handed 310
Helix 69
69
F
148 152Right-handed 310
Helix 70
70
F
176 180Right-handed 310
Helix 71
71
F
181 203Right-handed alpha
Helix 72
72
F
216 220Right-handed 310
Helix 73
73
F
223 227Right-handed 310
Helix 74
74
F
233 247Right-handed alpha
Helix 75
75
F
252 257Right-handed alpha
Helix 76
76
F
269 273Right-handed 310
Helix 77
77
F
289 293Right-handed 310
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There are 12 sheets in PDB entry 3U8U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
131 135anti-parallel
Strand 3
A
91 95anti-parallel
Strand 4
A
62 68parallel
Strand 5
A
312 316anti-parallel
Strand 6
A
295 300anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
157 161anti-parallel
Strand 3
A
166 171anti-parallel
Strand 4
A
205 210parallel
Strand 5
A
283 287anti-parallel
Strand 6
A
250 251anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
131 135anti-parallel
Strand 3
B
91 95anti-parallel
Strand 4
B
62 68parallel
Strand 5
B
312 316anti-parallel
Strand 6
B
295 300anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
157 161anti-parallel
Strand 3
B
166 171anti-parallel
Strand 4
B
205 210parallel
Strand 5
B
283 287anti-parallel
Strand 6
B
250 251anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 120first strand
Strand 2
C
131 135anti-parallel
Strand 3
C
91 95anti-parallel
Strand 4
C
62 68parallel
Strand 5
C
312 316anti-parallel
Strand 6
C
295 300anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
141 144first strand
Strand 2
C
157 161anti-parallel
Strand 3
C
166 171anti-parallel
Strand 4
C
205 210parallel
Strand 5
C
283 287anti-parallel
Strand 6
C
250 251anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 120first strand
Strand 2
D
131 135anti-parallel
Strand 3
D
91 95anti-parallel
Strand 4
D
62 68parallel
Strand 5
D
312 316anti-parallel
Strand 6
D
295 300anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
141 144first strand
Strand 2
D
157 161anti-parallel
Strand 3
D
166 171anti-parallel
Strand 4
D
205 210parallel
Strand 5
D
283 287anti-parallel
Strand 6
D
250 251anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 119first strand
Strand 2
E
131 135anti-parallel
Strand 3
E
91 95anti-parallel
Strand 4
E
62 68parallel
Strand 5
E
312 316anti-parallel
Strand 6
E
295 300anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
141 144first strand
Strand 2
E
157 161anti-parallel
Strand 3
E
166 171anti-parallel
Strand 4
E
205 210parallel
Strand 5
E
283 288anti-parallel
Strand 6
E
249 251anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
116 119first strand
Strand 2
F
131 135anti-parallel
Strand 3
F
91 95anti-parallel
Strand 4
F
62 68parallel
Strand 5
F
312 316anti-parallel
Strand 6
F
295 300anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
141 144first strand
Strand 2
F
157 161anti-parallel
Strand 3
F
166 171anti-parallel
Strand 4
F
205 210parallel
Strand 5
F
283 287anti-parallel
Strand 6
F
250 251anti-parallel
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