Analysis of interatomic Contacts of Structural Units in PDB entry:
3U8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U8Z entry

There are 4 chains in PDB entry 3U8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 20LYS 312
B
LYS 20LYS 312
C
LYS 20LYS 312
D
LYS 20LYS 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3U8Z. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
42 54Right-handed alpha
Helix 2
2
A
58 60Right-handed 310
Helix 3
3
A
104 109Right-handed alpha
Helix 4
4
A
111 128Right-handed alpha
Helix 5
5
A
134 150Right-handed alpha
Helix 6
6
A
180 195Right-handed alpha
Helix 7
7
A
201 212Right-handed alpha
Helix 8
8
A
289 310Right-handed alpha
Helix 9
9
B
42 54Right-handed alpha
Helix 10
10
B
58 60Right-handed 310
Helix 11
11
B
104 109Right-handed alpha
Helix 12
12
B
111 128Right-handed alpha
Helix 13
13
B
134 150Right-handed alpha
Helix 14
14
B
180 195Right-handed alpha
Helix 15
15
B
201 212Right-handed alpha
Helix 16
16
B
289 310Right-handed alpha
Helix 17
17
C
42 54Right-handed alpha
Helix 18
18
C
58 60Right-handed 310
Helix 19
19
C
104 109Right-handed alpha
Helix 20
20
C
111 128Right-handed alpha
Helix 21
21
C
134 151Right-handed alpha
Helix 22
22
C
180 195Right-handed alpha
Helix 23
23
C
201 212Right-handed alpha
Helix 24
24
C
289 311Right-handed alpha
Helix 25
25
D
42 54Right-handed alpha
Helix 26
26
D
58 60Right-handed 310
Helix 27
27
D
104 109Right-handed alpha
Helix 28
28
D
111 128Right-handed alpha
Helix 29
29
D
134 150Right-handed alpha
Helix 30
30
D
200 212Right-handed alpha
Helix 31
31
D
289 310Right-handed alpha
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There are 6 sheets in PDB entry 3U8Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
71 74first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
21 27parallel
Strand 5
A
32 38anti-parallel
Strand 6
C
31 38anti-parallel
Strand 7
C
21 27anti-parallel
Strand 8
C
92 98parallel
Strand 9
C
62 68anti-parallel
Strand 10
C
71 74anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
254 257first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
231 236anti-parallel
Strand 4
A
220 226anti-parallel
Strand 5
A
283 286anti-parallel
Strand 6
A
270 275anti-parallel
Strand 7
A
261 267anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
71 74first strand
Strand 2
B
62 68anti-parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
21 27parallel
Strand 5
B
32 38anti-parallel
Strand 6
D
32 38anti-parallel
Strand 7
D
21 27anti-parallel
Strand 8
D
92 98parallel
Strand 9
D
62 68anti-parallel
Strand 10
D
71 74anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
254 257first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
231 236anti-parallel
Strand 4
B
220 226anti-parallel
Strand 5
B
283 286anti-parallel
Strand 6
B
270 275anti-parallel
Strand 7
B
261 267anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
254 257first strand
Strand 2
C
240 244anti-parallel
Strand 3
C
231 236anti-parallel
Strand 4
C
220 226anti-parallel
Strand 5
C
283 286anti-parallel
Strand 6
C
270 275anti-parallel
Strand 7
C
261 267anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
254 257first strand
Strand 2
D
240 244anti-parallel
Strand 3
D
231 236anti-parallel
Strand 4
D
220 226anti-parallel
Strand 5
D
283 286anti-parallel
Strand 6
D
270 275anti-parallel
Strand 7
D
261 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il