Analysis of interatomic Contacts of Structural Units in PDB entry:
3UAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UAG entry

There are 2 chains in PDB entry 3UAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 197
A
 LEU 199GLY 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3UAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
59 64Right-handed alpha
Helix 4
4
A
79 86Right-handed alpha
Helix 5
5
A
94 101Right-handed alpha
Helix 6
6
A
115 128Right-handed alpha
Helix 7
7
A
143 146Right-handed 310
Helix 8
8
A
160 165Right-handed alpha
Helix 9
9
A
184 186Right-handed 310
Helix 10
10
A
190 202Right-handed alpha
Helix 11
11
A
215 217Right-handed 310
Helix 12
12
A
258 260Right-handed 310
Helix 13
13
A
266 281Right-handed alpha
Helix 14
14
A
286 295Right-handed alpha
Helix 15
15
A
323 330Right-handed alpha
Helix 16
16
A
352 358Right-handed 310
Helix 17
17
A
373 379Right-handed alpha
Helix 18
18
A
381 383Right-handed 310
Helix 19
19
A
390 400Right-handed alpha
Helix 20
20
A
422 435Right-handed alpha
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There are 4 sheets in PDB entry 3UAG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
32 35parallel
Strand 3
A
8 11parallel
Strand 4
A
67 70parallel
Strand 5
A
90 92parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
207 211parallel
Strand 3
A
173 176parallel
Strand 4
A
105 110parallel
Strand 5
A
153 157parallel
Strand 6
A
133 137parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
247 250anti-parallel
Strand 3
A
253 257anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
364 369parallel
Strand 3
A
339 344parallel
Strand 4
A
406 409parallel
Strand 5
A
312 316parallel
Strand 6
A
304 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il