Analysis of interatomic Contacts of Structural Units in PDB entry:
3UAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UAQ entry

There are 2 chains in PDB entry 3UAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 53ASP 341
B
 VAL 54ASP 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3UAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
83 87Right-handed 310
Helix 2
2
A
94 106Right-handed alpha
Helix 3
3
A
219 223Right-handed 310
Helix 4
4
B
94 106Right-handed alpha
Helix 5
5
B
219 223Right-handed 310
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There are 8 sheets in PDB entry 3UAQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
152 159anti-parallel
Strand 4
A
121 128anti-parallel
Strand 5
A
112 113anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
183 184anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
146 149anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 181first strand
Strand 2
A
236 243anti-parallel
Strand 3
A
248 257anti-parallel
Strand 4
A
266 278anti-parallel
Strand 5
A
281 288anti-parallel
Strand 6
A
305 314anti-parallel
Strand 7
A
320 326anti-parallel
Strand 8
A
332 340anti-parallel
Strand 9
A
170 181anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
57 60anti-parallel
Strand 3
B
152 159anti-parallel
Strand 4
B
121 128anti-parallel
Strand 5
B
112 113anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
183 184anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
146 149anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 181first strand
Strand 2
B
236 243anti-parallel
Strand 3
B
248 257anti-parallel
Strand 4
B
266 278anti-parallel
Strand 5
B
281 288anti-parallel
Strand 6
B
305 314anti-parallel
Strand 7
B
320 326anti-parallel
Strand 8
B
332 340anti-parallel
Strand 9
B
170 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il