Analysis of interatomic Contacts of Structural Units in PDB entry:
3UB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UB0 entry

There are 6 chains in PDB entry 3UB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -2THR 192
B
 LYS 2GLN 83
C
 GLY 0ILE 81
D
 PRO -2THR 191
E
 LYS 2LEU 82
F
 GLY 0GLU 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 3UB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 28Right-handed alpha
Helix 2
2
A
31 71Right-handed alpha
Helix 3
3
A
80 99Right-handed alpha
Helix 4
4
A
100 112Right-handed alpha
Helix 5
5
A
134 141Right-handed alpha
Helix 6
6
A
168 172Right-handed 310
Helix 7
7
A
173 180Right-handed 310
Helix 8
8
B
10 20Right-handed alpha
Helix 9
9
B
21 24Right-handed 310
Helix 10
10
B
25 42Right-handed alpha
Helix 11
11
B
44 63Right-handed alpha
Helix 12
12
B
68 79Right-handed alpha
Helix 13
13
B
80 83Right-handed 310
Helix 14
14
C
2 20Right-handed alpha
Helix 15
15
C
21 24Right-handed 310
Helix 16
16
C
25 42Right-handed alpha
Helix 17
17
C
44 62Right-handed alpha
Helix 18
18
C
64 76Right-handed alpha
Helix 19
19
D
4 29Right-handed alpha
Helix 20
20
D
31 69Right-handed alpha
Helix 21
21
D
69 77Right-handed alpha
Helix 22
22
D
79 99Right-handed alpha
Helix 23
23
D
100 112Right-handed alpha
Helix 24
24
D
134 141Right-handed alpha
Helix 25
25
D
173 180Right-handed 310
Helix 26
26
E
10 20Right-handed alpha
Helix 27
27
E
21 24Right-handed 310
Helix 28
28
E
25 42Right-handed alpha
Helix 29
29
E
44 63Right-handed alpha
Helix 30
30
E
68 79Right-handed alpha
Helix 31
31
F
2 20Right-handed alpha
Helix 32
32
F
21 24Right-handed 310
Helix 33
33
F
25 42Right-handed alpha
Helix 34
34
F
44 62Right-handed alpha
Helix 35
35
F
64 76Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3UB0. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 120first strand
Strand 2
A
127 132anti-parallel
Strand 3
A
184 190anti-parallel
Strand 4
A
152 160anti-parallel
Strand 5
A
146 149anti-parallel
Strand 6
A
142 143anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
115 120first strand
Strand 2
D
127 132anti-parallel
Strand 3
D
184 190anti-parallel
Strand 4
D
152 160anti-parallel
Strand 5
D
146 149anti-parallel
Strand 6
D
142 143anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il