Analysis of interatomic Contacts of Structural Units in PDB entry:
3UB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UB7 entry

There are 2 chains in PDB entry 3UB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 42ASN 201
B
 ALA 41ASN 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3UB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 77Right-handed alpha
Helix 2
2
A
78 97Right-handed alpha
Helix 3
3
A
117 121Right-handed 310
Helix 4
4
A
135 146Right-handed alpha
Helix 5
5
A
186 193Right-handed alpha
Helix 6
6
A
193 201Right-handed alpha
Helix 7
7
B
42 75Right-handed alpha
Helix 8
8
B
78 97Right-handed alpha
Helix 9
9
B
117 121Right-handed 310
Helix 10
10
B
135 146Right-handed alpha
Helix 11
11
B
186 193Right-handed alpha
Helix 12
12
B
193 201Right-handed alpha
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There are 2 sheets in PDB entry 3UB7. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
178 185anti-parallel
Strand 4
A
164 173anti-parallel
Strand 5
A
149 155anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
101 106anti-parallel
Strand 3
B
178 185anti-parallel
Strand 4
B
164 173anti-parallel
Strand 5
B
149 155anti-parallel
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