Analysis of interatomic Contacts of Structural Units in PDB entry:
3UBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UBK entry

There are 2 chains in PDB entry 3UBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 0ALA 213
B
 VAL 0ALA 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 3UBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
37 42Right-handed alpha
Helix 3
3
A
61 73Right-handed alpha
Helix 4
4
A
83 100Right-handed alpha
Helix 5
5
A
101 110Right-handed alpha
Helix 6
6
A
117 138Right-handed alpha
Helix 7
7
A
150 168Right-handed alpha
Helix 8
8
A
175 180Right-handed 310
Helix 9
9
A
182 192Right-handed alpha
Helix 10
10
A
193 212Right-handed alpha
Helix 11
11
B
10 24Right-handed alpha
Helix 12
12
B
37 42Right-handed alpha
Helix 13
13
B
61 73Right-handed alpha
Helix 14
14
B
83 101Right-handed alpha
Helix 15
15
B
101 106Right-handed alpha
Helix 16
16
B
117 135Right-handed alpha
Helix 17
17
B
150 167Right-handed alpha
Helix 18
18
B
175 180Right-handed 310
Helix 19
19
B
182 193Right-handed alpha
Helix 20
20
B
193 210Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3UBK. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
2 5parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
2 5parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
57 59anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il