Analysis of interatomic Contacts of Structural Units in PDB entry:
3UBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UBM entry

There are 4 chains in PDB entry 3UBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ALA 436
B
 ASN 7ALA 436
C
 SER 8ALA 436
D
 ASN 7ALA 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 3UBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 35Right-handed alpha
Helix 2
2
A
49 53Right-handed 310
Helix 3
3
A
63 68Right-handed alpha
Helix 4
4
A
82 96Right-handed alpha
Helix 5
5
A
106 111Right-handed alpha
Helix 6
6
A
114 122Right-handed alpha
Helix 7
7
A
145 153Right-handed alpha
Helix 8
8
A
154 159Right-handed alpha
Helix 9
9
A
188 210Right-handed alpha
Helix 10
10
A
219 227Right-handed alpha
Helix 11
11
A
227 241Right-handed alpha
Helix 12
12
A
295 303Right-handed alpha
Helix 13
13
A
305 309Right-handed 310
Helix 14
14
A
316 321Right-handed alpha
Helix 15
15
A
323 336Right-handed alpha
Helix 16
16
A
339 350Right-handed alpha
Helix 17
17
A
359 366Right-handed alpha
Helix 18
18
A
366 372Right-handed alpha
Helix 19
19
A
410 418Right-handed alpha
Helix 20
20
A
421 431Right-handed alpha
Helix 21
21
B
23 35Right-handed alpha
Helix 22
22
B
49 54Right-handed 310
Helix 23
23
B
63 68Right-handed alpha
Helix 24
24
B
82 96Right-handed alpha
Helix 25
25
B
106 111Right-handed alpha
Helix 26
26
B
114 122Right-handed alpha
Helix 27
27
B
145 153Right-handed alpha
Helix 28
28
B
154 159Right-handed alpha
Helix 29
29
B
188 210Right-handed alpha
Helix 30
30
B
219 227Right-handed alpha
Helix 31
31
B
227 241Right-handed alpha
Helix 32
32
B
295 303Right-handed alpha
Helix 33
33
B
305 310Right-handed 310
Helix 34
34
B
319 322Right-handed 310
Helix 35
35
B
323 336Right-handed alpha
Helix 36
36
B
339 350Right-handed alpha
Helix 37
37
B
359 366Right-handed alpha
Helix 38
38
B
366 372Right-handed alpha
Helix 39
39
B
410 419Right-handed alpha
Helix 40
40
B
421 431Right-handed alpha
Helix 41
41
C
23 35Right-handed alpha
Helix 42
42
C
49 53Right-handed 310
Helix 43
43
C
63 68Right-handed alpha
Helix 44
44
C
82 96Right-handed alpha
Helix 45
45
C
106 111Right-handed alpha
Helix 46
46
C
114 122Right-handed alpha
Helix 47
47
C
145 153Right-handed alpha
Helix 48
48
C
154 159Right-handed alpha
Helix 49
49
C
188 210Right-handed alpha
Helix 50
50
C
219 227Right-handed alpha
Helix 51
51
C
227 241Right-handed alpha
Helix 52
52
C
295 304Right-handed alpha
Helix 53
53
C
305 309Right-handed 310
Helix 54
54
C
316 321Right-handed alpha
Helix 55
55
C
323 335Right-handed alpha
Helix 56
56
C
339 350Right-handed alpha
Helix 57
57
C
359 365Right-handed alpha
Helix 58
58
C
366 372Right-handed alpha
Helix 59
59
C
410 418Right-handed alpha
Helix 60
60
C
421 431Right-handed alpha
Helix 61
61
D
23 35Right-handed alpha
Helix 62
62
D
49 54Right-handed 310
Helix 63
63
D
63 68Right-handed alpha
Helix 64
64
D
82 96Right-handed alpha
Helix 65
65
D
106 112Right-handed alpha
Helix 66
66
D
114 122Right-handed alpha
Helix 67
67
D
145 153Right-handed alpha
Helix 68
68
D
154 159Right-handed alpha
Helix 69
69
D
188 210Right-handed alpha
Helix 70
70
D
219 227Right-handed alpha
Helix 71
71
D
227 241Right-handed alpha
Helix 72
72
D
295 303Right-handed alpha
Helix 73
73
D
305 311Right-handed 310
Helix 74
74
D
316 321Right-handed alpha
Helix 75
75
D
323 336Right-handed alpha
Helix 76
76
D
339 349Right-handed alpha
Helix 77
77
D
359 366Right-handed alpha
Helix 78
78
D
366 372Right-handed alpha
Helix 79
79
D
410 419Right-handed alpha
Helix 80
80
D
421 431Right-handed alpha
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There are 12 sheets in PDB entry 3UBM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
38 43parallel
Strand 3
A
15 19parallel
Strand 4
A
98 101parallel
Strand 5
A
126 131parallel
Strand 6
A
214 218parallel
Strand 7
B
392 394anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 275first strand
Strand 2
A
286 290anti-parallel
Strand 3
A
354 356anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 380first strand
Strand 2
A
384 389anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
B
213 218anti-parallel
Strand 3
B
126 131parallel
Strand 4
B
98 101parallel
Strand 5
B
15 19parallel
Strand 6
B
38 43parallel
Strand 7
B
74 77parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 275first strand
Strand 2
B
286 290anti-parallel
Strand 3
B
354 356anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 380first strand
Strand 2
B
384 389anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 77first strand
Strand 2
C
38 43parallel
Strand 3
C
15 19parallel
Strand 4
C
98 101parallel
Strand 5
C
126 131parallel
Strand 6
C
213 218parallel
Strand 7
D
393 394anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 275first strand
Strand 2
C
286 290anti-parallel
Strand 3
C
354 356anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 380first strand
Strand 2
C
384 389anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
392 394first strand
Strand 2
D
213 218anti-parallel
Strand 3
D
126 131parallel
Strand 4
D
98 101parallel
Strand 5
D
15 19parallel
Strand 6
D
38 43parallel
Strand 7
D
74 77parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
271 275first strand
Strand 2
D
286 290anti-parallel
Strand 3
D
354 356anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
375 380first strand
Strand 2
D
384 389anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il