Analysis of interatomic Contacts of Structural Units in PDB entry:
3UBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UBN entry

There are 12 chains in PDB entry 3UBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 11SER 325
B
GLY 1ASP 174
C
ASP 11PRO 324
D
GLY 1GLU 171
E
ASP 11SER 325
F
GLY 1ARG 170
G
ASP 11SER 325
H
GLY 1ARG 170
I
ASP 11SER 325
J
GLY 1ARG 170
K
PRO 9SER 325
L
GLY 1ARG 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3UBN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
65 72Right-handed alpha
Helix 2
2
A
104 112Right-handed alpha
Helix 3
3
A
122 127Right-handed alpha
Helix 4
4
A
187 196Right-handed alpha
Helix 5
5
B
37 58Right-handed alpha
Helix 6
6
B
74 127Right-handed alpha
Helix 7
7
B
145 154Right-handed alpha
Helix 8
8
B
159 174Right-handed alpha
Helix 9
9
C
65 72Right-handed alpha
Helix 10
10
C
104 113Right-handed alpha
Helix 11
11
C
187 196Right-handed alpha
Helix 12
12
D
37 58Right-handed alpha
Helix 13
13
D
74 127Right-handed alpha
Helix 14
14
D
145 153Right-handed alpha
Helix 15
15
D
158 170Right-handed alpha
Helix 16
16
E
65 71Right-handed alpha
Helix 17
17
E
104 112Right-handed alpha
Helix 18
18
E
122 127Right-handed alpha
Helix 19
19
E
187 196Right-handed alpha
Helix 20
20
F
37 58Right-handed alpha
Helix 21
21
F
74 127Right-handed alpha
Helix 22
22
F
145 154Right-handed alpha
Helix 23
23
F
158 169Right-handed alpha
Helix 24
24
G
65 72Right-handed alpha
Helix 25
25
G
104 113Right-handed alpha
Helix 26
26
G
122 127Right-handed alpha
Helix 27
27
G
187 196Right-handed alpha
Helix 28
28
H
37 58Right-handed alpha
Helix 29
29
H
74 127Right-handed alpha
Helix 30
30
H
145 154Right-handed alpha
Helix 31
31
H
158 170Right-handed alpha
Helix 32
32
I
65 71Right-handed alpha
Helix 33
33
I
73 77Right-handed 310
Helix 34
34
I
104 113Right-handed alpha
Helix 35
35
I
187 196Right-handed alpha
Helix 36
36
J
37 58Right-handed alpha
Helix 37
37
J
74 127Right-handed alpha
Helix 38
38
J
145 154Right-handed alpha
Helix 39
39
J
158 170Right-handed alpha
Helix 40
40
K
65 72Right-handed alpha
Helix 41
41
K
104 113Right-handed alpha
Helix 42
42
K
187 195Right-handed alpha
Helix 43
43
L
37 58Right-handed alpha
Helix 44
44
L
74 127Right-handed alpha
Helix 45
45
L
145 155Right-handed alpha
Helix 46
46
L
158 170Right-handed alpha
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There are 66 sheets in PDB entry 3UBN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
31 36first strand
Strand 2
B
22 28anti-parallel
Strand 3
A
12 17anti-parallel
Strand 4
B
137 140anti-parallel
Strand 5
B
130 134anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
25 26first strand
Strand 2
A
34 35anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 41first strand
Strand 2
A
315 317anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
43 44first strand
Strand 2
A
294 295parallel
Strand 3
A
307 308parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
51 54first strand
Strand 2
A
274 279parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
59 60first strand
Strand 2
A
87 89parallel
Strand 3
A
267 269parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
115 119first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
175 184anti-parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
151 153anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
115 119first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
175 184anti-parallel
Strand 4
A
229 237anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 169first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
202 205anti-parallel
Strand 4
A
210 213anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
281 282first strand
Strand 2
A
302 303anti-parallel
Strand 3
B
64 65anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
32 36first strand
Strand 2
D
22 27anti-parallel
Strand 3
C
12 17anti-parallel
Strand 4
D
137 140anti-parallel
Strand 5
D
130 132anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
25 28first strand
Strand 2
C
31 35anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
39 41first strand
Strand 2
C
315 317anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
43 44first strand
Strand 2
C
294 295parallel
Strand 3
C
307 308parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
51 54first strand
Strand 2
C
274 279parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
59 60first strand
Strand 2
C
87 89parallel
Strand 3
C
267 269parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
115 118first strand
Strand 2
C
257 262anti-parallel
Strand 3
C
175 184anti-parallel
Strand 4
C
251 254anti-parallel
Strand 5
C
151 153anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
115 118first strand
Strand 2
C
257 262anti-parallel
Strand 3
C
175 184anti-parallel
Strand 4
C
229 237anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
136 141first strand
Strand 2
C
144 146anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
164 169first strand
Strand 2
C
242 247anti-parallel
Strand 3
C
202 205anti-parallel
Strand 4
C
210 213anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
286 288first strand
Strand 2
C
281 283anti-parallel
Strand 3
C
302 303anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
31 36first strand
Strand 2
F
22 28anti-parallel
Strand 3
E
12 17anti-parallel
Strand 4
F
137 140anti-parallel
Strand 5
F
130 132anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
25 26first strand
Strand 2
E
34 35anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
39 41first strand
Strand 2
E
315 317anti-parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
43 44first strand
Strand 2
E
294 295parallel
Strand 3
E
307 308parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
51 54first strand
Strand 2
E
274 279parallel
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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
59 60first strand
Strand 2
E
87 89parallel
Strand 3
E
267 269parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
115 118first strand
Strand 2
E
257 262anti-parallel
Strand 3
E
175 184anti-parallel
Strand 4
E
251 254anti-parallel
Strand 5
E
151 153anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
115 118first strand
Strand 2
E
257 262anti-parallel
Strand 3
E
175 184anti-parallel
Strand 4
E
229 237anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
136 141first strand
Strand 2
E
144 146anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
164 169first strand
Strand 2
E
242 247anti-parallel
Strand 3
E
202 205anti-parallel
Strand 4
E
210 213anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
286 287first strand
Strand 2
E
281 283anti-parallel
Strand 3
E
302 303anti-parallel
Strand 4
F
64 65anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
31 36first strand
Strand 2
H
22 28anti-parallel
Strand 3
G
12 17anti-parallel
Strand 4
H
137 140anti-parallel
Strand 5
H
130 134anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
25 26first strand
Strand 2
G
34 35anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
39 41first strand
Strand 2
G
315 317anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
43 44first strand
Strand 2
G
294 295parallel
Strand 3
G
307 308parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
51 54first strand
Strand 2
G
274 279parallel
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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
59 60first strand
Strand 2
G
87 89parallel
Strand 3
G
267 269parallel
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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
115 119first strand
Strand 2
G
256 262anti-parallel
Strand 3
G
175 184anti-parallel
Strand 4
G
251 254anti-parallel
Strand 5
G
151 153anti-parallel
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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
115 119first strand
Strand 2
G
256 262anti-parallel
Strand 3
G
175 184anti-parallel
Strand 4
G
229 237anti-parallel
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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
130 131first strand
Strand 2
G
155 156anti-parallel
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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
136 141first strand
Strand 2
G
144 146anti-parallel
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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
164 169first strand
Strand 2
G
242 247anti-parallel
Strand 3
G
202 205anti-parallel
Strand 4
G
210 213anti-parallel
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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
281 282first strand
Strand 2
G
302 303anti-parallel
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There are 5 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
31 36first strand
Strand 2
J
22 28anti-parallel
Strand 3
I
12 17anti-parallel
Strand 4
J
137 140anti-parallel
Strand 5
J
130 134anti-parallel
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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
25 26first strand
Strand 2
I
34 35anti-parallel
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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
39 41first strand
Strand 2
I
315 317anti-parallel
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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
43 44first strand
Strand 2
I
294 295parallel
Strand 3
I
307 308parallel
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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
51 54first strand
Strand 2
I
274 279parallel
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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
59 60first strand
Strand 2
I
87 89parallel
Strand 3
I
267 269parallel
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There are 4 strands in AY sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
115 118first strand
Strand 2
I
257 262anti-parallel
Strand 3
I
175 184anti-parallel
Strand 4
I
229 237anti-parallel
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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
115 118first strand
Strand 2
I
257 262anti-parallel
Strand 3
I
175 184anti-parallel
Strand 4
I
251 252anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
136 141first strand
Strand 2
I
144 146anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
164 169first strand
Strand 2
I
242 247anti-parallel
Strand 3
I
202 205anti-parallel
Strand 4
I
210 213anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
286 287first strand
Strand 2
I
281 283anti-parallel
Strand 3
I
302 303anti-parallel
Strand 4
J
64 65anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
31 36first strand
Strand 2
L
22 28anti-parallel
Strand 3
K
12 17anti-parallel
Strand 4
L
137 140anti-parallel
Strand 5
L
130 134anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
25 26first strand
Strand 2
K
34 35anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
39 41first strand
Strand 2
K
315 317anti-parallel
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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
43 44first strand
Strand 2
K
294 295parallel
Strand 3
K
307 308parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
51 54first strand
Strand 2
K
274 279parallel
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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
59 60first strand
Strand 2
K
87 89parallel
Strand 3
K
267 269parallel
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There are 5 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
115 119first strand
Strand 2
K
256 262anti-parallel
Strand 3
K
175 184anti-parallel
Strand 4
K
251 254anti-parallel
Strand 5
K
151 153anti-parallel
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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
115 119first strand
Strand 2
K
256 262anti-parallel
Strand 3
K
175 184anti-parallel
Strand 4
K
229 237anti-parallel
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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
136 141first strand
Strand 2
K
144 146anti-parallel
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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
164 169first strand
Strand 2
K
242 247anti-parallel
Strand 3
K
202 205anti-parallel
Strand 4
K
210 213anti-parallel
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There are 3 strands in BN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
281 282first strand
Strand 2
K
302 304anti-parallel
Strand 3
L
63 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il