Analysis of interatomic Contacts of Structural Units in PDB entry:
3UBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UBR entry

There are 2 chains in PDB entry 3UBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 32TYR 470
B
 SER 32TYR 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3UBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 55Right-handed alpha
Helix 2
2
A
64 69Right-handed alpha
Helix 3
3
A
70 76Right-handed alpha
Helix 4
4
A
79 83Right-handed 310
Helix 5
5
A
90 92Right-handed 310
Helix 6
6
A
93 101Right-handed alpha
Helix 7
7
A
116 121Right-handed 310
Helix 8
8
A
125 140Right-handed alpha
Helix 9
9
A
144 148Right-handed 310
Helix 10
10
A
156 161Right-handed alpha
Helix 11
11
A
172 182Right-handed alpha
Helix 12
12
A
190 198Right-handed alpha
Helix 13
13
A
229 238Right-handed alpha
Helix 14
14
A
258 264Right-handed alpha
Helix 15
15
A
266 271Right-handed alpha
Helix 16
16
A
274 280Right-handed alpha
Helix 17
17
A
298 303Right-handed 310
Helix 18
18
A
306 310Right-handed 310
Helix 19
19
A
314 353Right-handed alpha
Helix 20
20
A
356 380Right-handed alpha
Helix 21
21
A
382 387Right-handed alpha
Helix 22
22
A
387 416Right-handed alpha
Helix 23
23
A
429 438Right-handed alpha
Helix 24
24
A
441 455Right-handed alpha
Helix 25
25
A
455 467Right-handed alpha
Helix 26
26
B
46 55Right-handed alpha
Helix 27
27
B
64 69Right-handed alpha
Helix 28
28
B
70 76Right-handed alpha
Helix 29
29
B
79 83Right-handed 310
Helix 30
30
B
90 92Right-handed 310
Helix 31
31
B
93 101Right-handed alpha
Helix 32
32
B
102 105Right-handed 310
Helix 33
33
B
116 121Right-handed 310
Helix 34
34
B
126 135Right-handed alpha
Helix 35
35
B
135 141Right-handed alpha
Helix 36
36
B
156 161Right-handed alpha
Helix 37
37
B
172 183Right-handed alpha
Helix 38
38
B
190 201Right-handed alpha
Helix 39
39
B
227 238Right-handed alpha
Helix 40
40
B
258 264Right-handed alpha
Helix 41
41
B
266 271Right-handed alpha
Helix 42
42
B
274 280Right-handed alpha
Helix 43
43
B
306 310Right-handed 310
Helix 44
44
B
314 354Right-handed alpha
Helix 45
45
B
356 380Right-handed alpha
Helix 46
46
B
382 387Right-handed alpha
Helix 47
47
B
387 416Right-handed alpha
Helix 48
48
B
429 437Right-handed alpha
Helix 49
49
B
440 455Right-handed alpha
Helix 50
50
B
455 467Right-handed alpha
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There are 6 sheets in PDB entry 3UBR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
218 219anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
251 252anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
290 292anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
218 219anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 244first strand
Strand 2
B
251 252anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 284first strand
Strand 2
B
290 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il