Analysis of interatomic Contacts of Structural Units in PDB entry:
3UBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UBT entry

There are 9 chains in PDB entry 3UBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 MET 1LYS 328
A
 MET 1LYS 328
B
 MET 1LYS 328
D
 T 4 A 9
E
 T 4 A 9
F
 T 7 A 12
G
 T 4 A 9
H
 T 7 A 12
C
 T 7 A 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 3UBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
Y
11 20Right-handed alpha
Helix 2
2
Y
34 42Right-handed alpha
Helix 3
3
Y
50 54Right-handed 310
Helix 4
4
Y
55 59Right-handed 310
Helix 5
5
Y
70 73Right-handed 310
Helix 6
6
Y
85 87Right-handed 310
Helix 7
7
Y
88 102Right-handed alpha
Helix 8
8
Y
112 117Right-handed 310
Helix 9
9
Y
120 134Right-handed alpha
Helix 10
10
Y
145 147Right-handed 310
Helix 11
11
Y
164 166Right-handed 310
Helix 12
12
Y
180 184Right-handed 310
Helix 13
13
Y
185 189Right-handed 310
Helix 14
14
Y
196 200Right-handed 310
Helix 15
15
Y
202 206Right-handed 310
Helix 16
16
Y
221 225Right-handed 310
Helix 17
17
Y
268 272Right-handed 310
Helix 18
18
Y
276 285Right-handed alpha
Helix 19
19
Y
296 306Right-handed alpha
Helix 20
20
Y
309 327Right-handed alpha
Helix 21
21
A
11 20Right-handed alpha
Helix 22
22
A
34 42Right-handed alpha
Helix 23
23
A
55 59Right-handed 310
Helix 24
24
A
70 73Right-handed 310
Helix 25
25
A
85 87Right-handed 310
Helix 26
26
A
88 102Right-handed alpha
Helix 27
27
A
112 117Right-handed 310
Helix 28
28
A
120 134Right-handed alpha
Helix 29
29
A
145 147Right-handed 310
Helix 30
30
A
164 166Right-handed 310
Helix 31
31
A
181 186Right-handed alpha
Helix 32
32
A
187 189Right-handed 310
Helix 33
33
A
196 200Right-handed 310
Helix 34
34
A
202 206Right-handed 310
Helix 35
35
A
219 224Right-handed alpha
Helix 36
36
A
268 272Right-handed 310
Helix 37
37
A
276 285Right-handed alpha
Helix 38
38
A
296 307Right-handed alpha
Helix 39
39
A
309 327Right-handed alpha
Helix 40
40
B
11 20Right-handed alpha
Helix 41
41
B
34 42Right-handed alpha
Helix 42
42
B
55 59Right-handed 310
Helix 43
43
B
70 74Right-handed 310
Helix 44
44
B
85 87Right-handed 310
Helix 45
45
B
88 102Right-handed alpha
Helix 46
46
B
112 117Right-handed 310
Helix 47
47
B
120 134Right-handed alpha
Helix 48
48
B
145 147Right-handed 310
Helix 49
49
B
164 166Right-handed 310
Helix 50
50
B
180 184Right-handed 310
Helix 51
51
B
185 189Right-handed 310
Helix 52
52
B
202 206Right-handed 310
Helix 53
53
B
219 224Right-handed alpha
Helix 54
54
B
268 272Right-handed 310
Helix 55
55
B
276 285Right-handed alpha
Helix 56
56
B
296 306Right-handed alpha
Helix 57
57
B
309 328Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 3UBT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
45 48first strand
Strand 2
Y
23 29parallel
Strand 3
Y
2 6parallel
Strand 4
Y
64 66parallel
Strand 5
Y
105 110parallel
Strand 6
Y
154 162anti-parallel
Strand 7
Y
135 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
75 76first strand
Strand 2
Y
79 80anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
193 194first strand
Strand 2
Y
212 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
255 258first strand
Strand 2
Y
261 263anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
23 29parallel
Strand 3
A
2 6parallel
Strand 4
A
64 66parallel
Strand 5
A
105 110parallel
Strand 6
A
154 162anti-parallel
Strand 7
A
135 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
79 80anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
212 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
261 263anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
23 28parallel
Strand 3
B
2 6parallel
Strand 4
B
64 66parallel
Strand 5
B
105 110parallel
Strand 6
B
154 162anti-parallel
Strand 7
B
135 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
212 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 258first strand
Strand 2
B
261 263anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il