Analysis of interatomic Contacts of Structural Units in PDB entry:
3UC0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UC0 entry

There are 6 chains in PDB entry 3UC0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 296
B	MET 1	GLY 296
H	GLU 1	PRO 223
I	GLU 1	PRO 223
L	GLU 2	PHE 210
M	GLU 2	ARG 212

There are 11 helices in PDB entry 3UC0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	H	86	90	Right-handed 310
Helix 2	2	H	166	168	Right-handed 310
Helix 3	3	H	195	199	Right-handed 310
Helix 4	4	I	86	90	Right-handed 310
Helix 5	5	I	166	168	Right-handed 310
Helix 6	6	I	195	199	Right-handed 310
Helix 7	7	L	80	84	Right-handed 310
Helix 8	8	L	122	127	Right-handed alpha
Helix 9	9	L	184	189	Right-handed alpha
Helix 10	10	M	122	127	Right-handed alpha
Helix 11	11	M	184	189	Right-handed alpha

There are 24 sheets in PDB entry 3UC0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	48	anti-parallel
Strand 4	A	137	143	anti-parallel
Strand 5	A	160	164	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	26	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	179	186	anti-parallel
Strand 4	A	170	175	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	30	34	parallel
Strand 3	B	41	48	anti-parallel
Strand 4	B	137	143	anti-parallel
Strand 5	B	160	164	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	26	first strand
Strand 2	B	282	288	anti-parallel
Strand 3	B	179	186	anti-parallel
Strand 4	B	170	175	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	33	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	110	113	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	146	155	anti-parallel
Strand 3	H	186	194	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	146	155	anti-parallel
Strand 3	H	186	194	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	204	210	anti-parallel
Strand 3	H	215	221	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	117	121	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	33	40	anti-parallel
Strand 5	I	44	51	anti-parallel
Strand 6	I	58	59	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	117	121	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	110	113	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	134	first strand
Strand 2	I	146	155	anti-parallel
Strand 3	I	186	194	anti-parallel
Strand 4	I	173	175	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	134	first strand
Strand 2	I	146	155	anti-parallel
Strand 3	I	186	194	anti-parallel
Strand 4	I	179	180	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	161	164	first strand
Strand 2	I	204	210	anti-parallel
Strand 3	I	215	221	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	193	198	anti-parallel
Strand 4	L	206	210	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	8	first strand
Strand 2	M	20	26	anti-parallel
Strand 3	M	71	76	anti-parallel
Strand 4	M	63	68	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	14	first strand
Strand 2	M	103	107	parallel
Strand 3	M	86	91	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	46	50	anti-parallel
Strand 6	M	54	55	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	115	119	first strand
Strand 2	M	130	140	anti-parallel
Strand 3	M	174	183	anti-parallel
Strand 4	M	160	164	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	154	155	first strand
Strand 2	M	146	151	anti-parallel
Strand 3	M	192	198	anti-parallel
Strand 4	M	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UC0

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UC0