Analysis of interatomic Contacts of Structural Units in PDB entry:
3UCQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UCQ entry

There is 1 chain in PDB entry 3UCQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -4GLY 646
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3UCQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-4 18Right-handed alpha
Helix 2
2
A
20 47Right-handed alpha
Helix 3
3
A
48 51Right-handed 310
Helix 4
4
A
52 68Right-handed alpha
Helix 5
5
A
69 82Right-handed alpha
Helix 6
6
A
84 88Right-handed 310
Helix 7
7
A
97 103Right-handed alpha
Helix 8
8
A
104 110Right-handed alpha
Helix 9
9
A
111 118Right-handed alpha
Helix 10
10
A
136 140Right-handed 310
Helix 11
11
A
150 153Right-handed 310
Helix 12
12
A
154 168Right-handed alpha
Helix 13
13
A
185 193Right-handed alpha
Helix 14
14
A
195 200Right-handed alpha
Helix 15
15
A
208 216Right-handed alpha
Helix 16
16
A
259 275Right-handed alpha
Helix 17
17
A
285 289Right-handed 310
Helix 18
18
A
300 318Right-handed alpha
Helix 19
19
A
330 335Right-handed alpha
Helix 20
20
A
336 338Right-handed 310
Helix 21
21
A
353 367Right-handed alpha
Helix 22
22
A
369 378Right-handed alpha
Helix 23
23
A
403 410Right-handed alpha
Helix 24
24
A
413 426Right-handed alpha
Helix 25
25
A
453 458Right-handed alpha
Helix 26
26
A
459 467Right-handed alpha
Helix 27
27
A
468 489Right-handed alpha
Helix 28
28
A
498 502Right-handed 310
Helix 29
29
A
506 512Right-handed 310
Helix 30
30
A
518 524Right-handed 310
Helix 31
31
A
528 538Right-handed alpha
Helix 32
32
A
541 559Right-handed alpha
Helix 33
33
A
560 564Right-handed 310
Helix 34
34
A
606 614Right-handed alpha
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There are 7 sheets in PDB entry 3UCQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
122 125parallel
Strand 3
A
171 176parallel
Strand 4
A
280 283parallel
Strand 5
A
322 325parallel
Strand 6
A
350 352parallel
Strand 7
A
387 390parallel
Strand 8
A
492 496parallel
Strand 9
A
93 96parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
142 148anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
252 254anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
242 245anti-parallel
Strand 3
A
230 233anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
449 451anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 571first strand
Strand 2
A
579 584anti-parallel
Strand 3
A
591 596anti-parallel
Strand 4
A
640 645anti-parallel
Strand 5
A
616 619anti-parallel
Strand 6
A
625 627anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 605first strand
Strand 2
A
632 635anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il