Analysis of interatomic Contacts of Structural Units in PDB entry:
3UF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UF6 entry

There are 2 chains in PDB entry 3UF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLU 287
B
 THR 2GLU 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3UF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 38Right-handed alpha
Helix 2
2
A
51 56Right-handed alpha
Helix 3
3
A
67 81Right-handed alpha
Helix 4
4
A
93 102Right-handed alpha
Helix 5
5
A
103 107Right-handed 310
Helix 6
6
A
141 160Right-handed alpha
Helix 7
7
A
179 193Right-handed alpha
Helix 8
8
A
203 209Right-handed alpha
Helix 9
9
A
209 216Right-handed alpha
Helix 10
10
A
233 248Right-handed alpha
Helix 11
11
A
271 287Right-handed alpha
Helix 12
12
B
25 38Right-handed alpha
Helix 13
13
B
51 56Right-handed alpha
Helix 14
14
B
67 81Right-handed alpha
Helix 15
15
B
93 102Right-handed alpha
Helix 16
16
B
103 107Right-handed 310
Helix 17
17
B
141 159Right-handed alpha
Helix 18
18
B
179 192Right-handed alpha
Helix 19
19
B
203 209Right-handed alpha
Helix 20
20
B
209 216Right-handed alpha
Helix 21
21
B
233 247Right-handed alpha
Helix 22
22
B
271 287Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3UF6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
42 47parallel
Strand 3
A
17 21parallel
Strand 4
A
86 89parallel
Strand 5
A
263 264parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
166 169parallel
Strand 3
A
228 230parallel
Strand 4
A
129 132parallel
Strand 5
A
115 121anti-parallel
Strand 6
A
251 257anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
42 47parallel
Strand 3
B
17 21parallel
Strand 4
B
86 89parallel
Strand 5
B
263 264parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 202first strand
Strand 2
B
166 169parallel
Strand 3
B
228 230parallel
Strand 4
B
129 132parallel
Strand 5
B
115 121anti-parallel
Strand 6
B
251 257anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il