Analysis of interatomic Contacts of Structural Units in PDB entry:
3UFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UFB entry

There is 1 chain in PDB entry 3UFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12HIS 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3UFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 34Right-handed alpha
Helix 2
2
A
40 72Right-handed alpha
Helix 3
3
A
85 90Right-handed alpha
Helix 4
4
A
97 107Right-handed alpha
Helix 5
5
A
120 127Right-handed alpha
Helix 6
6
A
135 146Right-handed alpha
Helix 7
7
A
153 166Right-handed alpha
Helix 8
8
A
171 190Right-handed alpha
Helix 9
9
A
202 214Right-handed alpha
Helix 10
10
A
229 241Right-handed alpha
Helix 11
11
A
245 254Right-handed alpha
Helix 12
12
A
263 278Right-handed alpha
Helix 13
13
A
293 297Right-handed 310
Helix 14
14
A
298 302Right-handed 310
Helix 15
15
A
317 322Right-handed alpha
Helix 16
16
A
323 324Right-handed 310
Helix 17
17
A
325 329Right-handed 310
Helix 18
18
A
332 345Right-handed alpha
Helix 19
19
A
364 369Right-handed alpha
Helix 20
20
A
371 384Right-handed alpha
Helix 21
21
A
440 443Right-handed 310
Helix 22
22
A
444 452Right-handed alpha
Helix 23
23
A
465 468Right-handed alpha
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There are 3 sheets in PDB entry 3UFB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
117 119anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
257 260parallel
Strand 3
A
221 223parallel
Strand 4
A
305 308parallel
Strand 5
A
357 363parallel
Strand 6
A
405 411anti-parallel
Strand 7
A
385 391anti-parallel
Strand 8
A
418 423parallel
Strand 9
A
460 464anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 471first strand
Strand 2
A
477 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il