Analysis of interatomic Contacts of Structural Units in PDB entry:
3UFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UFK entry

There is 1 chain in PDB entry 3UFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 44TYR 843
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3UFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
83 87Right-handed 310
Helix 2
2
A
124 128Right-handed 310
Helix 3
3
A
165 168Right-handed 310
Helix 4
4
A
187 189Right-handed 310
Helix 5
5
A
229 233Right-handed 310
Helix 6
6
A
238 242Right-handed 310
Helix 7
7
A
247 252Right-handed alpha
Helix 8
8
A
272 276Right-handed 310
Helix 9
9
A
279 287Right-handed alpha
Helix 10
10
A
301 311Right-handed alpha
Helix 11
11
A
319 321Right-handed 310
Helix 12
12
A
328 338Right-handed alpha
Helix 13
13
A
360 364Right-handed 310
Helix 14
14
A
374 380Right-handed 310
Helix 15
15
A
382 391Right-handed alpha
Helix 16
16
A
399 404Right-handed 310
Helix 17
17
A
412 421Right-handed alpha
Helix 18
18
A
434 442Right-handed alpha
Helix 19
19
A
443 447Right-handed 310
Helix 20
20
A
456 461Right-handed alpha
Helix 21
21
A
461 474Right-handed alpha
Helix 22
22
A
501 505Right-handed 310
Helix 23
23
A
546 548Right-handed 310
Helix 24
24
A
581 588Right-handed alpha
Helix 25
25
A
649 658Right-handed alpha
Helix 26
26
A
663 668Right-handed 310
Helix 27
27
A
680 685Right-handed alpha
Helix 28
28
A
713 717Right-handed 310
Helix 29
29
A
719 729Right-handed alpha
Helix 30
30
A
750 754Right-handed 310
Helix 31
31
A
764 768Right-handed 310
Helix 32
32
A
779 790Right-handed alpha
Helix 33
33
A
795 805Right-handed alpha
Helix 34
34
A
823 828Right-handed alpha
Helix 35
35
A
834 839Right-handed alpha
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There are 9 sheets in PDB entry 3UFK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
81 82parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 63first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
177 185anti-parallel
Strand 4
A
170 174anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
90 101anti-parallel
Strand 3
A
205 213anti-parallel
Strand 4
A
221 228anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
156 159anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 138first strand
Strand 2
A
144 149anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
323 325anti-parallel
Strand 3
A
348 349parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 478first strand
Strand 2
A
489 495anti-parallel
Strand 3
A
481 484anti-parallel
Strand 4
A
632 635parallel
Strand 5
A
590 601anti-parallel
Strand 6
A
562 567first strand
Strand 7
A
554 559anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 544first strand
Strand 2
A
508 517anti-parallel
Strand 3
A
590 601anti-parallel
Strand 4
A
632 635anti-parallel
Strand 5
A
481 484parallel
Strand 6
A
489 495anti-parallel
Strand 7
A
622 627first strand
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
771 772first strand
Strand 2
A
777 778anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il