Analysis of interatomic Contacts of Structural Units in PDB entry:
3UFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UFX entry

There are 8 chains in PDB entry 3UFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 288
B	MET 1	ALA 378
D	MET 1	GLY 288
E	MET 1	MET 373
F	MET 1	GLY 288
G	MET 1	VAL 371
H	MET 1	GLY 288
I	MET 1	VAL 371

There are104 helices in PDB entry 3UFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	31	Right-handed alpha
Helix 2	2	A	55	63	Right-handed alpha
Helix 3	3	A	73	87	Right-handed alpha
Helix 4	4	A	100	115	Right-handed alpha
Helix 5	5	A	138	142	Right-handed 310
Helix 6	6	A	154	167	Right-handed alpha
Helix 7	7	A	186	196	Right-handed alpha
Helix 8	8	A	212	225	Right-handed alpha
Helix 9	9	A	257	268	Right-handed alpha
Helix 10	10	A	275	287	Right-handed alpha
Helix 11	11	B	4	15	Right-handed alpha
Helix 12	12	B	27	39	Right-handed alpha
Helix 13	13	B	64	76	Right-handed alpha
Helix 14	14	B	124	132	Right-handed alpha
Helix 15	15	B	133	136	Right-handed 310
Helix 16	16	B	148	160	Right-handed alpha
Helix 17	17	B	164	182	Right-handed alpha
Helix 18	18	B	211	216	Right-handed 310
Helix 19	19	B	217	222	Right-handed alpha
Helix 20	20	B	223	228	Right-handed alpha
Helix 21	21	B	230	239	Right-handed alpha
Helix 22	22	B	256	270	Right-handed alpha
Helix 23	23	B	285	298	Right-handed alpha
Helix 24	24	B	316	328	Right-handed alpha
Helix 25	25	B	344	352	Right-handed alpha
Helix 26	26	B	362	373	Right-handed alpha
Helix 27	27	D	17	31	Right-handed alpha
Helix 28	28	D	55	63	Right-handed alpha
Helix 29	29	D	73	87	Right-handed alpha
Helix 30	30	D	100	114	Right-handed alpha
Helix 31	31	D	138	142	Right-handed 310
Helix 32	32	D	154	167	Right-handed alpha
Helix 33	33	D	186	196	Right-handed alpha
Helix 34	34	D	212	225	Right-handed alpha
Helix 35	35	D	257	268	Right-handed alpha
Helix 36	36	D	275	287	Right-handed alpha
Helix 37	37	E	4	15	Right-handed alpha
Helix 38	38	E	27	39	Right-handed alpha
Helix 39	39	E	64	76	Right-handed alpha
Helix 40	40	E	124	132	Right-handed alpha
Helix 41	41	E	133	136	Right-handed 310
Helix 42	42	E	148	160	Right-handed alpha
Helix 43	43	E	164	182	Right-handed alpha
Helix 44	44	E	211	216	Right-handed 310
Helix 45	45	E	217	222	Right-handed alpha
Helix 46	46	E	223	228	Right-handed alpha
Helix 47	47	E	230	239	Right-handed alpha
Helix 48	48	E	256	270	Right-handed alpha
Helix 49	49	E	285	298	Right-handed alpha
Helix 50	50	E	316	328	Right-handed alpha
Helix 51	51	E	344	350	Right-handed alpha
Helix 52	52	E	362	372	Right-handed alpha
Helix 53	53	F	17	31	Right-handed alpha
Helix 54	54	F	55	63	Right-handed alpha
Helix 55	55	F	73	87	Right-handed alpha
Helix 56	56	F	100	114	Right-handed alpha
Helix 57	57	F	138	142	Right-handed 310
Helix 58	58	F	154	167	Right-handed alpha
Helix 59	59	F	186	196	Right-handed alpha
Helix 60	60	F	212	225	Right-handed alpha
Helix 61	61	F	257	268	Right-handed alpha
Helix 62	62	F	275	287	Right-handed alpha
Helix 63	63	G	4	15	Right-handed alpha
Helix 64	64	G	27	39	Right-handed alpha
Helix 65	65	G	64	76	Right-handed alpha
Helix 66	66	G	124	132	Right-handed alpha
Helix 67	67	G	133	136	Right-handed 310
Helix 68	68	G	148	160	Right-handed alpha
Helix 69	69	G	164	182	Right-handed alpha
Helix 70	70	G	211	216	Right-handed 310
Helix 71	71	G	217	222	Right-handed alpha
Helix 72	72	G	223	228	Right-handed alpha
Helix 73	73	G	230	239	Right-handed alpha
Helix 74	74	G	256	270	Right-handed alpha
Helix 75	75	G	285	298	Right-handed alpha
Helix 76	76	G	316	329	Right-handed alpha
Helix 77	77	G	345	350	Right-handed alpha
Helix 78	78	G	362	370	Right-handed alpha
Helix 79	79	H	17	31	Right-handed alpha
Helix 80	80	H	55	63	Right-handed alpha
Helix 81	81	H	73	87	Right-handed alpha
Helix 82	82	H	100	114	Right-handed alpha
Helix 83	83	H	138	142	Right-handed 310
Helix 84	84	H	154	167	Right-handed alpha
Helix 85	85	H	186	196	Right-handed alpha
Helix 86	86	H	212	225	Right-handed alpha
Helix 87	87	H	257	268	Right-handed alpha
Helix 88	88	H	275	287	Right-handed alpha
Helix 89	89	I	4	15	Right-handed alpha
Helix 90	90	I	27	39	Right-handed alpha
Helix 91	91	I	64	76	Right-handed alpha
Helix 92	92	I	124	132	Right-handed alpha
Helix 93	93	I	133	136	Right-handed 310
Helix 94	94	I	148	160	Right-handed alpha
Helix 95	95	I	164	182	Right-handed alpha
Helix 96	96	I	211	216	Right-handed 310
Helix 97	97	I	217	222	Right-handed alpha
Helix 98	98	I	223	228	Right-handed alpha
Helix 99	99	I	230	239	Right-handed alpha
Helix 100	100	I	256	270	Right-handed alpha
Helix 101	101	I	285	298	Right-handed alpha
Helix 102	102	I	316	329	Right-handed alpha
Helix 103	103	I	344	352	Right-handed alpha
Helix 104	104	I	362	371	Right-handed alpha

There are 32 sheets in PDB entry 3UFX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	50	53	anti-parallel
Strand 3	A	33	38	parallel
Strand 4	A	9	13	parallel
Strand 5	A	67	70	parallel
Strand 6	A	91	94	parallel
Strand 7	A	117	120	parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	125	128	anti-parallel
Strand 3	A	171	176	anti-parallel
Strand 4	A	147	151	parallel
Strand 5	A	202	208	parallel
Strand 6	A	229	234	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	88	92	anti-parallel
Strand 3	B	42	46	anti-parallel
Strand 4	B	59	62	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	83	84	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	112	118	anti-parallel
Strand 3	B	96	107	anti-parallel
Strand 4	B	184	195	anti-parallel
Strand 5	B	200	202	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	112	118	anti-parallel
Strand 3	B	96	107	anti-parallel
Strand 4	B	184	195	anti-parallel
Strand 5	B	206	209	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	276	279	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	254	first strand
Strand 2	B	304	315	parallel
Strand 3	B	336	343	parallel
Strand 4	B	357	359	parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	50	53	anti-parallel
Strand 3	D	33	38	parallel
Strand 4	D	9	13	parallel
Strand 5	D	67	70	parallel
Strand 6	D	91	94	parallel
Strand 7	D	117	120	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	135	first strand
Strand 2	D	125	128	anti-parallel
Strand 3	D	171	176	anti-parallel
Strand 4	D	147	151	parallel
Strand 5	D	202	208	parallel
Strand 6	D	229	234	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	25	first strand
Strand 2	E	88	92	anti-parallel
Strand 3	E	42	46	anti-parallel
Strand 4	E	59	62	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	80	first strand
Strand 2	E	83	84	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	140	first strand
Strand 2	E	112	118	anti-parallel
Strand 3	E	96	107	anti-parallel
Strand 4	E	184	195	anti-parallel
Strand 5	E	200	202	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	140	first strand
Strand 2	E	112	118	anti-parallel
Strand 3	E	96	107	anti-parallel
Strand 4	E	184	195	anti-parallel
Strand 5	E	206	209	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	245	first strand
Strand 2	E	276	279	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	254	first strand
Strand 2	E	304	315	parallel
Strand 3	E	336	343	parallel
Strand 4	E	357	359	parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	50	53	anti-parallel
Strand 3	F	33	38	parallel
Strand 4	F	9	13	parallel
Strand 5	F	67	70	parallel
Strand 6	F	91	94	parallel
Strand 7	F	117	120	parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	135	first strand
Strand 2	F	125	128	anti-parallel
Strand 3	F	171	176	anti-parallel
Strand 4	F	147	151	parallel
Strand 5	F	202	208	parallel
Strand 6	F	229	234	parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	25	first strand
Strand 2	G	88	92	anti-parallel
Strand 3	G	42	46	anti-parallel
Strand 4	G	59	62	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	80	first strand
Strand 2	G	83	84	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	140	first strand
Strand 2	G	112	118	anti-parallel
Strand 3	G	96	107	anti-parallel
Strand 4	G	184	195	anti-parallel
Strand 5	G	200	202	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	140	first strand
Strand 2	G	112	118	anti-parallel
Strand 3	G	96	107	anti-parallel
Strand 4	G	184	195	anti-parallel
Strand 5	G	206	209	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	242	245	first strand
Strand 2	G	276	279	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	250	254	first strand
Strand 2	G	304	315	parallel
Strand 3	G	336	343	parallel
Strand 4	G	357	359	parallel

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There are 7 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	47	first strand
Strand 2	H	50	53	anti-parallel
Strand 3	H	33	38	parallel
Strand 4	H	9	13	parallel
Strand 5	H	67	70	parallel
Strand 6	H	91	94	parallel
Strand 7	H	117	120	parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	135	first strand
Strand 2	H	125	128	anti-parallel
Strand 3	H	171	176	anti-parallel
Strand 4	H	147	151	parallel
Strand 5	H	202	208	parallel
Strand 6	H	229	234	parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	22	25	first strand
Strand 2	I	88	92	anti-parallel
Strand 3	I	42	46	anti-parallel
Strand 4	I	59	62	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	80	first strand
Strand 2	I	83	84	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	137	140	first strand
Strand 2	I	112	118	anti-parallel
Strand 3	I	96	107	anti-parallel
Strand 4	I	184	195	anti-parallel
Strand 5	I	200	202	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	137	140	first strand
Strand 2	I	112	118	anti-parallel
Strand 3	I	96	107	anti-parallel
Strand 4	I	184	195	anti-parallel
Strand 5	I	206	209	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	242	245	first strand
Strand 2	I	276	279	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	250	254	first strand
Strand 2	I	304	315	parallel
Strand 3	I	336	343	parallel
Strand 4	I	357	359	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UFX