Analysis of interatomic Contacts of Structural Units in PDB entry:
3UG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UG3 entry

There are 6 chains in PDB entry 3UG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 483
B	SER 2	LEU 483
C	SER 2	GLU 484
D	SER 2	GLU 482
E	SER 2	LEU 483
F	SER 2	LEU 483

There are 90 helices in PDB entry 3UG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	22	Right-handed 310
Helix 2	2	A	50	60	Right-handed alpha
Helix 3	3	A	70	76	Right-handed 310
Helix 4	4	A	77	82	Right-handed 310
Helix 5	5	A	84	88	Right-handed 310
Helix 6	6	A	105	117	Right-handed alpha
Helix 7	7	A	130	143	Right-handed alpha
Helix 8	8	A	147	156	Right-handed alpha
Helix 9	9	A	183	202	Right-handed alpha
Helix 10	10	A	214	226	Right-handed alpha
Helix 11	11	A	242	248	Right-handed alpha
Helix 12	12	A	248	266	Right-handed alpha
Helix 13	13	A	267	274	Right-handed alpha
Helix 14	14	A	298	316	Right-handed alpha
Helix 15	15	A	344	356	Right-handed alpha
Helix 16	16	B	17	21	Right-handed 310
Helix 17	17	B	50	60	Right-handed alpha
Helix 18	18	B	70	76	Right-handed 310
Helix 19	19	B	77	82	Right-handed 310
Helix 20	20	B	84	88	Right-handed 310
Helix 21	21	B	105	117	Right-handed alpha
Helix 22	22	B	130	143	Right-handed alpha
Helix 23	23	B	147	156	Right-handed alpha
Helix 24	24	B	183	202	Right-handed alpha
Helix 25	25	B	214	226	Right-handed alpha
Helix 26	26	B	242	248	Right-handed alpha
Helix 27	27	B	248	266	Right-handed alpha
Helix 28	28	B	267	274	Right-handed alpha
Helix 29	29	B	298	316	Right-handed alpha
Helix 30	30	B	344	356	Right-handed alpha
Helix 31	31	C	17	22	Right-handed 310
Helix 32	32	C	50	60	Right-handed alpha
Helix 33	33	C	70	76	Right-handed 310
Helix 34	34	C	77	82	Right-handed 310
Helix 35	35	C	84	88	Right-handed 310
Helix 36	36	C	105	117	Right-handed alpha
Helix 37	37	C	130	143	Right-handed alpha
Helix 38	38	C	147	156	Right-handed alpha
Helix 39	39	C	183	202	Right-handed alpha
Helix 40	40	C	214	226	Right-handed alpha
Helix 41	41	C	242	248	Right-handed alpha
Helix 42	42	C	248	266	Right-handed alpha
Helix 43	43	C	267	274	Right-handed alpha
Helix 44	44	C	298	316	Right-handed alpha
Helix 45	45	C	344	356	Right-handed alpha
Helix 46	46	D	17	21	Right-handed 310
Helix 47	47	D	50	60	Right-handed alpha
Helix 48	48	D	70	76	Right-handed 310
Helix 49	49	D	77	82	Right-handed 310
Helix 50	50	D	84	88	Right-handed 310
Helix 51	51	D	105	117	Right-handed alpha
Helix 52	52	D	130	143	Right-handed alpha
Helix 53	53	D	147	156	Right-handed alpha
Helix 54	54	D	183	202	Right-handed alpha
Helix 55	55	D	214	226	Right-handed alpha
Helix 56	56	D	242	248	Right-handed alpha
Helix 57	57	D	248	266	Right-handed alpha
Helix 58	58	D	267	274	Right-handed alpha
Helix 59	59	D	298	316	Right-handed alpha
Helix 60	60	D	344	356	Right-handed alpha
Helix 61	61	E	17	22	Right-handed 310
Helix 62	62	E	50	60	Right-handed alpha
Helix 63	63	E	70	76	Right-handed 310
Helix 64	64	E	77	82	Right-handed 310
Helix 65	65	E	84	88	Right-handed 310
Helix 66	66	E	105	117	Right-handed alpha
Helix 67	67	E	130	143	Right-handed alpha
Helix 68	68	E	147	156	Right-handed alpha
Helix 69	69	E	183	202	Right-handed alpha
Helix 70	70	E	214	226	Right-handed alpha
Helix 71	71	E	242	248	Right-handed alpha
Helix 72	72	E	248	266	Right-handed alpha
Helix 73	73	E	267	274	Right-handed alpha
Helix 74	74	E	298	316	Right-handed alpha
Helix 75	75	E	344	356	Right-handed alpha
Helix 76	76	F	17	21	Right-handed 310
Helix 77	77	F	50	60	Right-handed alpha
Helix 78	78	F	70	76	Right-handed 310
Helix 79	79	F	77	82	Right-handed 310
Helix 80	80	F	84	88	Right-handed 310
Helix 81	81	F	105	117	Right-handed alpha
Helix 82	82	F	130	143	Right-handed alpha
Helix 83	83	F	147	156	Right-handed alpha
Helix 84	84	F	183	202	Right-handed alpha
Helix 85	85	F	214	226	Right-handed alpha
Helix 86	86	F	242	248	Right-handed alpha
Helix 87	87	F	248	266	Right-handed alpha
Helix 88	88	F	267	274	Right-handed alpha
Helix 89	89	F	298	316	Right-handed alpha
Helix 90	90	F	344	356	Right-handed alpha

There are 30 sheets in PDB entry 3UG3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	463	first strand
Strand 2	A	430	438	anti-parallel
Strand 3	A	475	482	anti-parallel
Strand 4	A	404	411	anti-parallel
Strand 5	A	392	398	anti-parallel
Strand 6	A	360	367	anti-parallel
Strand 7	A	4	15	anti-parallel
Strand 8	A	418	424	parallel
Strand 9	A	466	471	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	64	67	parallel
Strand 3	A	119	123	parallel
Strand 4	A	166	169	parallel
Strand 5	A	206	209	parallel
Strand 6	A	231	238	parallel
Strand 7	A	276	284	parallel
Strand 8	A	321	324	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	A	98	100	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	337	first strand
Strand 2	A	340	343	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	377	first strand
Strand 2	A	382	390	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	463	first strand
Strand 2	B	430	438	anti-parallel
Strand 3	B	475	482	anti-parallel
Strand 4	B	404	411	anti-parallel
Strand 5	B	392	398	anti-parallel
Strand 6	B	360	367	anti-parallel
Strand 7	B	4	15	anti-parallel
Strand 8	B	418	424	parallel
Strand 9	B	466	471	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	64	67	parallel
Strand 3	B	119	123	parallel
Strand 4	B	166	169	parallel
Strand 5	B	206	209	parallel
Strand 6	B	231	238	parallel
Strand 7	B	276	284	parallel
Strand 8	B	321	325	parallel
Strand 9	B	22	24	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	93	first strand
Strand 2	B	98	100	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	337	first strand
Strand 2	B	340	343	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	377	first strand
Strand 2	B	382	390	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	463	first strand
Strand 2	C	430	438	anti-parallel
Strand 3	C	475	482	anti-parallel
Strand 4	C	404	411	anti-parallel
Strand 5	C	392	398	anti-parallel
Strand 6	C	360	367	anti-parallel
Strand 7	C	4	15	anti-parallel
Strand 8	C	418	424	parallel
Strand 9	C	466	471	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	64	67	parallel
Strand 3	C	119	123	parallel
Strand 4	C	166	169	parallel
Strand 5	C	206	209	parallel
Strand 6	C	231	238	parallel
Strand 7	C	276	284	parallel
Strand 8	C	321	324	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	98	100	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	337	first strand
Strand 2	C	340	343	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	377	first strand
Strand 2	C	382	390	anti-parallel

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There are 9 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	463	first strand
Strand 2	D	430	438	anti-parallel
Strand 3	D	475	481	anti-parallel
Strand 4	D	405	411	anti-parallel
Strand 5	D	392	398	anti-parallel
Strand 6	D	360	367	anti-parallel
Strand 7	D	4	15	anti-parallel
Strand 8	D	418	424	parallel
Strand 9	D	466	471	anti-parallel

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There are 9 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	64	67	parallel
Strand 3	D	119	123	parallel
Strand 4	D	166	169	parallel
Strand 5	D	206	209	parallel
Strand 6	D	231	238	parallel
Strand 7	D	276	284	parallel
Strand 8	D	321	325	parallel
Strand 9	D	22	24	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	98	100	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	337	first strand
Strand 2	D	340	343	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	377	first strand
Strand 2	D	382	390	anti-parallel

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There are 9 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	463	first strand
Strand 2	E	430	438	anti-parallel
Strand 3	E	475	482	anti-parallel
Strand 4	E	404	411	anti-parallel
Strand 5	E	392	398	anti-parallel
Strand 6	E	360	367	anti-parallel
Strand 7	E	4	15	anti-parallel
Strand 8	E	418	424	parallel
Strand 9	E	466	471	anti-parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	24	first strand
Strand 2	E	64	67	parallel
Strand 3	E	119	123	parallel
Strand 4	E	166	169	parallel
Strand 5	E	206	209	parallel
Strand 6	E	231	238	parallel
Strand 7	E	276	284	parallel
Strand 8	E	321	324	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	98	100	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	334	337	first strand
Strand 2	E	340	343	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	377	first strand
Strand 2	E	382	390	anti-parallel

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There are 9 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	463	first strand
Strand 2	F	430	438	anti-parallel
Strand 3	F	475	482	anti-parallel
Strand 4	F	404	411	anti-parallel
Strand 5	F	392	398	anti-parallel
Strand 6	F	360	367	anti-parallel
Strand 7	F	4	15	anti-parallel
Strand 8	F	418	424	parallel
Strand 9	F	466	471	anti-parallel

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There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	24	first strand
Strand 2	F	64	67	parallel
Strand 3	F	119	123	parallel
Strand 4	F	166	169	parallel
Strand 5	F	206	209	parallel
Strand 6	F	231	238	parallel
Strand 7	F	276	284	parallel
Strand 8	F	321	325	parallel
Strand 9	F	22	24	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	93	first strand
Strand 2	F	98	100	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	337	first strand
Strand 2	F	340	343	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	370	377	first strand
Strand 2	F	382	390	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UG3