Analysis of interatomic Contacts of Structural Units in PDB entry:
3UGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UGQ entry

There is 1 chain in PDB entry 3UGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33LYS 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3UGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 47Right-handed alpha
Helix 2
2
A
62 83Right-handed alpha
Helix 3
3
A
97 104Right-handed alpha
Helix 4
4
A
104 109Right-handed alpha
Helix 5
5
A
132 143Right-handed alpha
Helix 6
6
A
146 150Right-handed 310
Helix 7
7
A
165 169Right-handed 310
Helix 8
8
A
188 190Right-handed 310
Helix 9
9
A
191 209Right-handed alpha
Helix 10
10
A
238 257Right-handed alpha
Helix 11
11
A
296 301Right-handed alpha
Helix 12
12
A
325 338Right-handed alpha
Helix 13
13
A
359 375Right-handed alpha
Helix 14
14
A
402 413Right-handed alpha
Helix 15
15
A
422 429Right-handed alpha
Helix 16
16
A
446 460Right-handed alpha
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There are 5 sheets in PDB entry 3UGQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
60 61anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
152 161parallel
Strand 3
A
177 187anti-parallel
Strand 4
A
316 321anti-parallel
Strand 5
A
285 294anti-parallel
Strand 6
A
273 279anti-parallel
Strand 7
A
224 229anti-parallel
Strand 8
A
260 263parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
114 117anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
312 313anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
350 354parallel
Strand 3
A
417 421parallel
Strand 4
A
431 435anti-parallel
Strand 5
A
443 445anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il