Analysis of interatomic Contacts of Structural Units in PDB entry:
3UGT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UGT entry

There are 4 chains in PDB entry 3UGT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 36	LYS 462
B	ALA 36	LYS 462
C	ALA 36	LYS 462
D	ALA 36	LYS 462

There are 58 helices in PDB entry 3UGT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	37	47	Right-handed alpha
Helix 2	2	A	62	83	Right-handed alpha
Helix 3	3	A	96	103	Right-handed alpha
Helix 4	4	A	104	109	Right-handed alpha
Helix 5	5	A	132	142	Right-handed alpha
Helix 6	6	A	148	150	Right-handed 310
Helix 7	7	A	188	208	Right-handed alpha
Helix 8	8	A	238	257	Right-handed alpha
Helix 9	9	A	295	301	Right-handed alpha
Helix 10	10	A	325	338	Right-handed alpha
Helix 11	11	A	359	375	Right-handed alpha
Helix 12	12	A	402	413	Right-handed alpha
Helix 13	13	A	422	428	Right-handed alpha
Helix 14	14	A	446	461	Right-handed alpha
Helix 15	15	B	37	47	Right-handed alpha
Helix 16	16	B	62	83	Right-handed alpha
Helix 17	17	B	96	104	Right-handed alpha
Helix 18	18	B	104	109	Right-handed alpha
Helix 19	19	B	132	143	Right-handed alpha
Helix 20	20	B	146	150	Right-handed 310
Helix 21	21	B	188	190	Right-handed 310
Helix 22	22	B	191	207	Right-handed alpha
Helix 23	23	B	238	255	Right-handed alpha
Helix 24	24	B	295	301	Right-handed alpha
Helix 25	25	B	325	338	Right-handed alpha
Helix 26	26	B	359	375	Right-handed alpha
Helix 27	27	B	402	407	Right-handed alpha
Helix 28	28	B	422	428	Right-handed alpha
Helix 29	29	B	446	459	Right-handed alpha
Helix 30	30	C	37	47	Right-handed alpha
Helix 31	31	C	62	83	Right-handed alpha
Helix 32	32	C	97	103	Right-handed alpha
Helix 33	33	C	104	109	Right-handed alpha
Helix 34	34	C	133	142	Right-handed alpha
Helix 35	35	C	148	150	Right-handed 310
Helix 36	36	C	188	190	Right-handed 310
Helix 37	37	C	191	209	Right-handed alpha
Helix 38	38	C	218	222	Right-handed 310
Helix 39	39	C	238	255	Right-handed alpha
Helix 40	40	C	325	338	Right-handed alpha
Helix 41	41	C	359	375	Right-handed alpha
Helix 42	42	C	402	409	Right-handed alpha
Helix 43	43	C	422	429	Right-handed alpha
Helix 44	44	C	446	460	Right-handed alpha
Helix 45	45	D	38	47	Right-handed alpha
Helix 46	46	D	62	83	Right-handed alpha
Helix 47	47	D	97	103	Right-handed alpha
Helix 48	48	D	132	143	Right-handed alpha
Helix 49	49	D	148	150	Right-handed 310
Helix 50	50	D	188	190	Right-handed 310
Helix 51	51	D	191	209	Right-handed alpha
Helix 52	52	D	238	257	Right-handed alpha
Helix 53	53	D	296	301	Right-handed alpha
Helix 54	54	D	330	338	Right-handed alpha
Helix 55	55	D	359	375	Right-handed alpha
Helix 56	56	D	402	413	Right-handed alpha
Helix 57	57	D	422	428	Right-handed alpha
Helix 58	58	D	446	459	Right-handed alpha

There are 23 sheets in PDB entry 3UGT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	60	61	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	152	155	parallel
Strand 3	A	184	187	anti-parallel
Strand 4	A	316	319	anti-parallel
Strand 5	A	285	294	anti-parallel
Strand 6	A	273	279	anti-parallel
Strand 7	A	224	229	anti-parallel
Strand 8	A	260	261	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	127	128	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	305	306	parallel
Strand 3	A	312	313	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	177	179	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	351	354	parallel
Strand 3	A	417	421	parallel
Strand 4	A	431	435	anti-parallel
Strand 5	A	443	445	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	152	155	parallel
Strand 3	B	184	187	anti-parallel
Strand 4	B	316	319	anti-parallel
Strand 5	B	285	294	anti-parallel
Strand 6	B	273	279	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	127	128	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	177	179	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	306	first strand
Strand 2	B	312	313	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	351	354	parallel
Strand 3	B	417	421	parallel
Strand 4	B	431	435	anti-parallel
Strand 5	B	442	445	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	60	61	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	152	155	parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	316	319	anti-parallel
Strand 5	C	285	294	anti-parallel
Strand 6	C	273	279	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	260	261	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	126	128	anti-parallel
Strand 3	C	115	116	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	305	306	parallel
Strand 3	C	312	313	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	177	179	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	350	354	parallel
Strand 3	C	417	421	parallel
Strand 4	C	431	435	anti-parallel
Strand 5	C	442	445	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	60	61	anti-parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	152	155	parallel
Strand 3	D	183	187	anti-parallel
Strand 4	D	316	320	anti-parallel
Strand 5	D	285	294	anti-parallel
Strand 6	D	274	279	anti-parallel
Strand 7	D	224	229	anti-parallel
Strand 8	D	260	263	parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	126	128	anti-parallel
Strand 3	D	114	116	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	305	306	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	177	179	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	396	first strand
Strand 2	D	351	354	parallel
Strand 3	D	417	421	parallel
Strand 4	D	432	435	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UGT

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UGT