Analysis of interatomic Contacts of Structural Units in PDB entry:
3UIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UIF entry

There is 1 chain in PDB entry 3UIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 24TYR 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3UIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 55Right-handed alpha
Helix 2
2
A
56 64Right-handed alpha
Helix 3
3
A
77 88Right-handed alpha
Helix 4
4
A
98 108Right-handed alpha
Helix 5
5
A
135 140Right-handed 310
Helix 6
6
A
151 163Right-handed alpha
Helix 7
7
A
166 170Right-handed 310
Helix 8
8
A
176 186Right-handed alpha
Helix 9
9
A
197 204Right-handed alpha
Helix 10
10
A
214 216Right-handed 310
Helix 11
11
A
217 221Right-handed 310
Helix 12
12
A
230 236Right-handed alpha
Helix 13
13
A
236 256Right-handed alpha
Helix 14
14
A
259 267Right-handed alpha
Helix 15
15
A
273 280Right-handed alpha
Helix 16
16
A
289 293Right-handed 310
Helix 17
17
A
297 314Right-handed alpha
Helix 18
18
A
322 327Right-handed alpha
Helix 19
19
A
329 339Right-handed alpha
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There are 3 sheets in PDB entry 3UIF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
28 39anti-parallel
Strand 3
A
66 73parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
28 39anti-parallel
Strand 3
A
93 97parallel
Strand 4
A
224 229anti-parallel
Strand 5
A
111 116anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
143 146parallel
Strand 3
A
191 194parallel
Strand 4
A
124 128anti-parallel
Strand 5
A
207 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il