Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UJ0 entry

There are 2 chains in PDB entry 3UJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ILE 585
B
 SER 6ILE 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3UJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 73Right-handed alpha
Helix 2
2
A
86 110Right-handed alpha
Helix 3
3
A
156 159Right-handed 310
Helix 4
4
A
272 276Right-handed 310
Helix 5
5
A
277 279Right-handed 310
Helix 6
6
A
436 460Right-handed alpha
Helix 7
7
A
466 485Right-handed alpha
Helix 8
8
A
503 513Right-handed alpha
Helix 9
9
A
514 524Right-handed alpha
Helix 10
10
A
555 564Right-handed alpha
Helix 11
11
A
567 582Right-handed alpha
Helix 12
12
A
583 585Right-handed 310
Helix 13
13
B
41 44Right-handed 310
Helix 14
14
B
67 73Right-handed alpha
Helix 15
15
B
86 110Right-handed alpha
Helix 16
16
B
156 159Right-handed 310
Helix 17
17
B
272 276Right-handed 310
Helix 18
18
B
277 279Right-handed 310
Helix 19
19
B
436 460Right-handed alpha
Helix 20
20
B
466 485Right-handed alpha
Helix 21
21
B
503 513Right-handed alpha
Helix 22
22
B
514 524Right-handed alpha
Helix 23
23
B
552 564Right-handed alpha
Helix 24
24
B
567 582Right-handed alpha
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There are 8 sheets in PDB entry 3UJ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 199first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
37 39anti-parallel
Strand 4
A
24 29anti-parallel
Strand 5
A
14 20anti-parallel
Strand 6
A
218 224anti-parallel
Strand 7
A
181 186anti-parallel
Strand 8
A
161 165anti-parallel
Strand 9
A
120 125anti-parallel
Strand 10
A
58 61anti-parallel
Strand 11
A
14 20anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
148 152anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 256first strand
Strand 2
A
259 265anti-parallel
Strand 3
A
415 421anti-parallel
Strand 4
A
397 405anti-parallel
Strand 5
A
387 392anti-parallel
Strand 6
A
430 434anti-parallel
Strand 7
A
239 244anti-parallel
Strand 8
A
281 286anti-parallel
Strand 9
A
303 307anti-parallel
Strand 10
A
367 371anti-parallel
Strand 11
A
387 392anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
355 358anti-parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 199first strand
Strand 2
B
207 211anti-parallel
Strand 3
B
37 39anti-parallel
Strand 4
B
24 29anti-parallel
Strand 5
B
14 20anti-parallel
Strand 6
B
218 224anti-parallel
Strand 7
B
181 186anti-parallel
Strand 8
B
161 165anti-parallel
Strand 9
B
120 125anti-parallel
Strand 10
B
58 61anti-parallel
Strand 11
B
14 20anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
148 152anti-parallel
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There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 256first strand
Strand 2
B
259 265anti-parallel
Strand 3
B
415 421anti-parallel
Strand 4
B
397 405anti-parallel
Strand 5
B
387 392anti-parallel
Strand 6
B
430 434anti-parallel
Strand 7
B
239 244anti-parallel
Strand 8
B
281 286anti-parallel
Strand 9
B
303 307anti-parallel
Strand 10
B
367 371anti-parallel
Strand 11
B
387 392anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
355 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il