Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UJD entry

There is 1 chain in PDB entry 3UJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10ASN 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3UJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
20 32Right-handed alpha
Helix 3
3
A
39 48Right-handed alpha
Helix 4
4
A
67 78Right-handed alpha
Helix 5
5
A
87 97Right-handed alpha
Helix 6
6
A
129 133Right-handed 310
Helix 7
7
A
134 148Right-handed alpha
Helix 8
8
A
164 168Right-handed 310
Helix 9
9
A
169 180Right-handed alpha
Helix 10
10
A
185 196Right-handed alpha
Helix 11
11
A
206 224Right-handed alpha
Helix 12
12
A
224 232Right-handed alpha
Helix 13
13
A
233 253Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3UJD.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
80 85parallel
Strand 3
A
58 62parallel
Strand 4
A
121 127parallel
Strand 5
A
149 162parallel
Strand 6
A
256 264anti-parallel
Strand 7
A
199 205anti-parallel
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