Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UJG entry

There are 2 chains in PDB entry 3UJG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 20PRO 318
B
 SER 180LYS 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3UJG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 71Right-handed alpha
Helix 2
2
A
102 108Right-handed alpha
Helix 3
3
A
113 134Right-handed alpha
Helix 4
4
A
137 141Right-handed 310
Helix 5
5
A
160 164Right-handed 310
Helix 6
6
A
179 183Right-handed 310
Helix 7
7
A
184 190Right-handed alpha
Helix 8
8
A
194 213Right-handed alpha
Helix 9
9
A
225 235Right-handed alpha
Helix 10
10
A
247 258Right-handed alpha
Helix 11
11
A
261 265Right-handed 310
Helix 12
12
A
267 273Right-handed alpha
Helix 13
13
A
274 279Right-handed alpha
Helix 14
14
A
290 297Right-handed alpha
Helix 15
15
A
304 316Right-handed alpha
Helix 16
16
B
218 220Right-handed 310
Helix 17
17
B
248 269Right-handed alpha
Helix 18
18
B
281 302Right-handed alpha
Helix 19
19
B
368 378Right-handed alpha
Helix 20
20
B
403 406Right-handed 310
Helix 21
21
B
431 436Right-handed alpha
Helix 22
22
B
439 457Right-handed alpha
Helix 23
23
B
471 488Right-handed alpha
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There are 6 sheets in PDB entry 3UJG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
46 53anti-parallel
Strand 4
A
89 95anti-parallel
Strand 5
A
80 85anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
147 149anti-parallel
Strand 3
A
155 157anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 195first strand
Strand 2
B
494 500anti-parallel
Strand 3
B
424 430anti-parallel
Strand 4
B
348 353anti-parallel
Strand 5
B
356 359anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 216first strand
Strand 2
B
233 245anti-parallel
Strand 3
B
326 327anti-parallel
Strand 4
B
400 401anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 216first strand
Strand 2
B
233 245anti-parallel
Strand 3
B
329 334anti-parallel
Strand 4
B
338 344anti-parallel
Strand 5
B
414 419anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
388 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il