Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UJH entry

There are 2 chains in PDB entry 3UJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3LYS 562
B
 GLN 5LYS 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 3UJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 8Right-handed 310
Helix 2
2
A
9 23Right-handed alpha
Helix 3
3
A
26 31Right-handed alpha
Helix 4
4
A
33 39Right-handed alpha
Helix 5
5
A
58 72Right-handed alpha
Helix 6
6
A
73 83Right-handed alpha
Helix 7
7
A
96 102Right-handed 310
Helix 8
8
A
116 137Right-handed alpha
Helix 9
9
A
155 158Right-handed 310
Helix 10
10
A
159 171Right-handed alpha
Helix 11
11
A
172 179Right-handed alpha
Helix 12
12
A
191 200Right-handed alpha
Helix 13
13
A
203 205Right-handed 310
Helix 14
14
A
218 236Right-handed alpha
Helix 15
15
A
239 245Right-handed 310
Helix 16
16
A
253 261Right-handed alpha
Helix 17
17
A
263 267Right-handed 310
Helix 18
18
A
275 279Right-handed 310
Helix 19
19
A
282 294Right-handed alpha
Helix 20
20
A
294 315Right-handed alpha
Helix 21
21
A
316 319Right-handed 310
Helix 22
22
A
320 335Right-handed alpha
Helix 23
23
A
347 351Right-handed 310
Helix 24
24
A
352 366Right-handed alpha
Helix 25
25
A
390 395Right-handed 310
Helix 26
26
A
396 403Right-handed alpha
Helix 27
27
A
428 447Right-handed alpha
Helix 28
28
A
449 457Right-handed alpha
Helix 29
29
A
483 506Right-handed alpha
Helix 30
30
A
512 514Right-handed 310
Helix 31
31
A
515 534Right-handed alpha
Helix 32
32
A
537 541Right-handed 310
Helix 33
33
A
542 546Right-handed 310
Helix 34
34
A
547 562Right-handed alpha
Helix 35
35
B
9 23Right-handed alpha
Helix 36
36
B
26 31Right-handed alpha
Helix 37
37
B
33 39Right-handed alpha
Helix 38
38
B
58 72Right-handed alpha
Helix 39
39
B
73 83Right-handed alpha
Helix 40
40
B
96 102Right-handed 310
Helix 41
41
B
116 136Right-handed alpha
Helix 42
42
B
155 158Right-handed 310
Helix 43
43
B
159 171Right-handed alpha
Helix 44
44
B
172 180Right-handed alpha
Helix 45
45
B
191 200Right-handed alpha
Helix 46
46
B
203 205Right-handed 310
Helix 47
47
B
218 236Right-handed alpha
Helix 48
48
B
239 245Right-handed 310
Helix 49
49
B
253 261Right-handed alpha
Helix 50
50
B
263 267Right-handed 310
Helix 51
51
B
275 279Right-handed 310
Helix 52
52
B
282 294Right-handed alpha
Helix 53
53
B
294 315Right-handed alpha
Helix 54
54
B
316 319Right-handed 310
Helix 55
55
B
320 335Right-handed alpha
Helix 56
56
B
347 351Right-handed 310
Helix 57
57
B
352 366Right-handed alpha
Helix 58
58
B
390 395Right-handed 310
Helix 59
59
B
396 403Right-handed alpha
Helix 60
60
B
428 447Right-handed alpha
Helix 61
61
B
449 456Right-handed alpha
Helix 62
62
B
483 506Right-handed alpha
Helix 63
63
B
512 514Right-handed 310
Helix 64
64
B
515 534Right-handed alpha
Helix 65
65
B
537 541Right-handed 310
Helix 66
66
B
542 546Right-handed 310
Helix 67
67
B
547 562Right-handed alpha
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There are 6 sheets in PDB entry 3UJH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
474 479anti-parallel
Strand 4
A
408 413parallel
Strand 5
A
340 345parallel
Strand 6
A
383 385parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
114 115anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
149 153parallel
Strand 3
A
207 212parallel
Strand 4
A
247 250parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
49 51anti-parallel
Strand 3
B
474 479anti-parallel
Strand 4
B
408 413parallel
Strand 5
B
340 345parallel
Strand 6
B
383 385parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
114 115anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 187first strand
Strand 2
B
149 153parallel
Strand 3
B
207 212parallel
Strand 4
B
247 250parallel
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