Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UJN entry

There are 2 chains in PDB entry 3UJN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -7	VAL 1134
A	ASN 1136	GLY 1295

There are 52 helices in PDB entry 3UJN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	25	Right-handed alpha
Helix 2	2	A	48	59	Right-handed alpha
Helix 3	3	A	85	97	Right-handed alpha
Helix 4	4	A	120	130	Right-handed alpha
Helix 5	5	A	142	151	Right-handed 310
Helix 6	6	A	162	167	Right-handed alpha
Helix 7	7	A	168	178	Right-handed alpha
Helix 8	8	A	183	197	Right-handed alpha
Helix 9	9	A	202	213	Right-handed alpha
Helix 10	10	A	214	219	Right-handed alpha
Helix 11	11	A	219	224	Right-handed alpha
Helix 12	12	A	236	248	Right-handed alpha
Helix 13	13	A	296	303	Right-handed alpha
Helix 14	14	A	303	321	Right-handed alpha
Helix 15	15	A	361	381	Right-handed alpha
Helix 16	16	A	423	425	Right-handed 310
Helix 17	17	A	474	490	Right-handed alpha
Helix 18	18	A	491	495	Right-handed 310
Helix 19	19	A	507	518	Right-handed alpha
Helix 20	20	A	528	530	Right-handed 310
Helix 21	21	A	538	545	Right-handed alpha
Helix 22	22	A	559	571	Right-handed alpha
Helix 23	23	A	602	606	Right-handed alpha
Helix 24	24	A	632	641	Right-handed alpha
Helix 25	25	A	649	654	Right-handed alpha
Helix 26	26	A	701	706	Right-handed 310
Helix 27	27	A	707	724	Right-handed alpha
Helix 28	28	A	730	732	Right-handed 310
Helix 29	29	A	748	762	Right-handed alpha
Helix 30	30	A	763	769	Right-handed alpha
Helix 31	31	A	810	814	Right-handed 310
Helix 32	32	A	841	846	Right-handed alpha
Helix 33	33	A	859	876	Right-handed alpha
Helix 34	34	A	888	902	Right-handed alpha
Helix 35	35	A	910	913	Right-handed 310
Helix 36	36	A	915	922	Right-handed alpha
Helix 37	37	A	935	946	Right-handed alpha
Helix 38	38	A	978	997	Right-handed alpha
Helix 39	39	A	998	1008	Right-handed alpha
Helix 40	40	A	1030	1035	Right-handed alpha
Helix 41	41	A	1053	1064	Right-handed alpha
Helix 42	42	A	1072	1077	Right-handed alpha
Helix 43	43	A	1081	1085	Right-handed 310
Helix 44	44	A	1095	1099	Right-handed 310
Helix 45	45	A	1103	1112	Right-handed alpha
Helix 46	46	A	1113	1125	Right-handed alpha
Helix 47	47	A	1135	1142	Right-handed alpha
Helix 48	48	A	1143	1148	Right-handed 310
Helix 49	49	A	1205	1216	Right-handed alpha
Helix 50	50	A	1240	1242	Right-handed 310
Helix 51	51	A	1266	1270	Right-handed 310
Helix 52	52	A	1283	1295	Right-handed alpha

There are 12 sheets in PDB entry 3UJN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-5	-3	first strand
Strand 2	A	0	9	anti-parallel
Strand 3	A	32	43	anti-parallel
Strand 4	A	103	115	anti-parallel
Strand 5	A	73	79	anti-parallel
Strand 6	A	137	140	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	225	228	anti-parallel
Strand 3	A	613	616	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	261	273	anti-parallel
Strand 3	A	280	295	anti-parallel
Strand 4	A	411	421	anti-parallel
Strand 5	A	327	337	anti-parallel
Strand 6	A	384	391	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	398	first strand
Strand 2	A	401	406	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	502	first strand
Strand 2	A	550	555	anti-parallel
Strand 3	A	435	440	anti-parallel
Strand 4	A	574	581	anti-parallel
Strand 5	A	522	526	anti-parallel
Strand 6	A	585	589	parallel
Strand 7	A	598	601	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	666	first strand
Strand 2	A	681	684	anti-parallel
Strand 3	A	692	699	anti-parallel
Strand 4	A	799	808	anti-parallel
Strand 5	A	734	741	anti-parallel
Strand 6	A	771	778	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	669	670	first strand
Strand 2	A	675	676	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	786	first strand
Strand 2	A	791	795	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	881	884	first strand
Strand 2	A	926	932	anti-parallel
Strand 3	A	824	830	anti-parallel
Strand 4	A	952	959	anti-parallel
Strand 5	A	904	908	anti-parallel
Strand 6	A	963	968	parallel
Strand 7	A	971	977	anti-parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1066	1071	first strand
Strand 2	A	1041	1046	parallel
Strand 3	A	1087	1090	parallel
Strand 4	A	1130	1134	parallel
Strand 5	A	1254	1257	parallel
Strand 6	A	1244	1248	anti-parallel
Strand 7	A	1218	1222	anti-parallel
Strand 8	A	1166	1174	anti-parallel
Strand 9	A	1189	1196	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1050	1052	first strand
Strand 2	A	1092	1093	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1156	1158	first strand
Strand 2	A	1200	1202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UJN

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJN