Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UJO entry

There are 4 chains in PDB entry 3UJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 24	ALA 276
B	ALA 24	ALA 276
C	ALA 24	ALA 276
D	ALA 24	ALA 276

There are 10 helices in PDB entry 3UJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	124	128	Right-handed 310
Helix 2	2	B	124	128	Right-handed 310
Helix 3	3	B	137	141	Right-handed 310
Helix 4	4	B	218	223	Right-handed alpha
Helix 5	5	B	268	274	Right-handed alpha
Helix 6	6	C	218	223	Right-handed alpha
Helix 7	7	D	124	128	Right-handed 310
Helix 8	8	D	137	141	Right-handed 310
Helix 9	9	D	218	223	Right-handed alpha
Helix 10	10	D	266	273	Right-handed alpha

There are 15 sheets in PDB entry 3UJO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	246	256	anti-parallel
Strand 3	A	25	31	anti-parallel
Strand 4	B	25	31	anti-parallel
Strand 5	B	246	256	anti-parallel
Strand 6	B	51	53	anti-parallel
Strand 7	B	46	48	anti-parallel

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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	216	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	185	191	anti-parallel
Strand 4	A	88	97	anti-parallel
Strand 5	A	246	256	anti-parallel
Strand 6	A	25	31	anti-parallel
Strand 7	B	25	31	anti-parallel
Strand 8	B	246	256	anti-parallel
Strand 9	B	89	97	anti-parallel
Strand 10	B	184	192	anti-parallel
Strand 11	B	197	204	anti-parallel
Strand 12	B	209	216	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	226	235	anti-parallel
Strand 4	A	77	78	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	226	235	anti-parallel
Strand 4	A	108	116	anti-parallel
Strand 5	A	143	147	anti-parallel
Strand 6	A	161	166	anti-parallel
Strand 7	A	174	176	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	267	first strand
Strand 2	C	271	276	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	C	266	268	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	68	73	anti-parallel
Strand 3	B	226	235	anti-parallel
Strand 4	B	77	78	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	68	73	anti-parallel
Strand 3	B	226	235	anti-parallel
Strand 4	B	108	116	anti-parallel
Strand 5	B	143	148	anti-parallel
Strand 6	B	161	166	anti-parallel
Strand 7	B	173	176	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	D	274	275	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	51	53	anti-parallel
Strand 3	C	246	256	anti-parallel
Strand 4	C	25	30	anti-parallel
Strand 5	D	25	31	anti-parallel
Strand 6	D	246	256	anti-parallel
Strand 7	D	52	53	anti-parallel
Strand 8	D	46	47	anti-parallel

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There are 12 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	216	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	184	191	anti-parallel
Strand 4	C	89	97	anti-parallel
Strand 5	C	246	256	anti-parallel
Strand 6	C	25	30	anti-parallel
Strand 7	D	25	31	anti-parallel
Strand 8	D	246	256	anti-parallel
Strand 9	D	89	97	anti-parallel
Strand 10	D	185	192	anti-parallel
Strand 11	D	197	204	anti-parallel
Strand 12	D	209	216	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	68	73	anti-parallel
Strand 3	C	226	235	anti-parallel
Strand 4	C	77	78	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	68	73	anti-parallel
Strand 3	C	226	235	anti-parallel
Strand 4	C	108	116	anti-parallel
Strand 5	C	143	148	anti-parallel
Strand 6	C	161	166	anti-parallel
Strand 7	C	173	176	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	68	73	anti-parallel
Strand 3	D	226	235	anti-parallel
Strand 4	D	77	78	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	68	73	anti-parallel
Strand 3	D	226	235	anti-parallel
Strand 4	D	108	115	anti-parallel
Strand 5	D	143	148	anti-parallel
Strand 6	D	161	166	anti-parallel
Strand 7	D	174	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJO