Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UJP entry

There are 3 chains in PDB entry 3UJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 51ALA 324
B
 GLU 53ALA 324
C
 GLU 52LEU 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3UJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 73Right-handed alpha
Helix 2
2
A
94 104Right-handed alpha
Helix 3
3
A
117 124Right-handed alpha
Helix 4
4
A
158 177Right-handed alpha
Helix 5
5
A
180 207Right-handed alpha
Helix 6
6
A
210 213Right-handed 310
Helix 7
7
A
223 230Right-handed alpha
Helix 8
8
A
247 260Right-handed alpha
Helix 9
9
A
274 280Right-handed alpha
Helix 10
10
A
306 320Right-handed alpha
Helix 11
11
B
61 73Right-handed alpha
Helix 12
12
B
74 76Right-handed 310
Helix 13
13
B
94 103Right-handed alpha
Helix 14
14
B
117 124Right-handed alpha
Helix 15
15
B
154 157Right-handed 310
Helix 16
16
B
158 177Right-handed alpha
Helix 17
17
B
180 207Right-handed alpha
Helix 18
18
B
223 230Right-handed alpha
Helix 19
19
B
247 261Right-handed alpha
Helix 20
20
B
274 284Right-handed alpha
Helix 21
21
B
306 320Right-handed alpha
Helix 22
22
C
61 73Right-handed alpha
Helix 23
23
C
74 76Right-handed 310
Helix 24
24
C
94 102Right-handed alpha
Helix 25
25
C
117 122Right-handed alpha
Helix 26
26
C
123 125Right-handed 310
Helix 27
27
C
154 157Right-handed 310
Helix 28
28
C
158 177Right-handed alpha
Helix 29
29
C
180 207Right-handed alpha
Helix 30
30
C
210 213Right-handed 310
Helix 31
31
C
223 230Right-handed alpha
Helix 32
32
C
249 261Right-handed alpha
Helix 33
33
C
274 281Right-handed alpha
Helix 34
34
C
306 320Right-handed alpha
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There are 9 sheets in PDB entry 3UJP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
56 59parallel
Strand 3
A
106 109parallel
Strand 4
A
130 132parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 220first strand
Strand 2
A
233 238parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 269first strand
Strand 2
A
287 292parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
56 59parallel
Strand 3
B
106 109parallel
Strand 4
B
130 132parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 220first strand
Strand 2
B
233 238parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 269first strand
Strand 2
B
287 292parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 80first strand
Strand 2
C
56 59parallel
Strand 3
C
106 109parallel
Strand 4
C
130 132parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 218first strand
Strand 2
C
233 236parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 269first strand
Strand 2
C
287 292parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il