Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UJQ entry

There are 4 chains in PDB entry 3UJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 24	ALA 276
B	ALA 24	ALA 276
C	ALA 24	ALA 276
D	ALA 24	ALA 276

There are 7 helices in PDB entry 3UJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	124	128	Right-handed 310
Helix 2	2	B	218	223	Right-handed alpha
Helix 3	3	B	268	273	Right-handed alpha
Helix 4	4	C	268	275	Right-handed alpha
Helix 5	5	D	124	128	Right-handed 310
Helix 6	6	D	218	223	Right-handed alpha
Helix 7	7	D	269	274	Right-handed alpha

There are 13 sheets in PDB entry 3UJQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	216	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	186	191	anti-parallel
Strand 4	A	88	99	anti-parallel
Strand 5	A	244	256	anti-parallel
Strand 6	A	25	31	anti-parallel
Strand 7	B	25	31	anti-parallel
Strand 8	B	246	256	anti-parallel
Strand 9	B	51	53	anti-parallel
Strand 10	B	46	48	anti-parallel

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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	216	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	186	191	anti-parallel
Strand 4	A	88	99	anti-parallel
Strand 5	A	244	256	anti-parallel
Strand 6	A	25	31	anti-parallel
Strand 7	B	25	31	anti-parallel
Strand 8	B	246	256	anti-parallel
Strand 9	B	89	97	anti-parallel
Strand 10	B	184	192	anti-parallel
Strand 11	B	197	204	anti-parallel
Strand 12	B	209	216	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	226	235	anti-parallel
Strand 4	A	114	116	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	226	235	anti-parallel
Strand 3	A	108	112	anti-parallel
Strand 4	A	143	148	anti-parallel
Strand 5	A	161	166	anti-parallel
Strand 6	A	171	176	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	C	265	267	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	68	73	anti-parallel
Strand 3	B	226	235	anti-parallel
Strand 4	B	77	78	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	68	73	anti-parallel
Strand 3	B	226	235	anti-parallel
Strand 4	B	108	116	anti-parallel
Strand 5	B	143	148	anti-parallel
Strand 6	B	161	166	anti-parallel
Strand 7	B	173	176	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	51	53	anti-parallel
Strand 3	C	246	256	anti-parallel
Strand 4	C	25	30	anti-parallel
Strand 5	D	25	31	anti-parallel
Strand 6	D	244	256	anti-parallel
Strand 7	D	51	53	anti-parallel
Strand 8	D	46	48	anti-parallel

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There are 12 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	216	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	184	191	anti-parallel
Strand 4	C	89	97	anti-parallel
Strand 5	C	246	256	anti-parallel
Strand 6	C	25	30	anti-parallel
Strand 7	D	25	31	anti-parallel
Strand 8	D	244	256	anti-parallel
Strand 9	D	89	99	anti-parallel
Strand 10	D	184	192	anti-parallel
Strand 11	D	197	204	anti-parallel
Strand 12	D	209	216	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	68	73	anti-parallel
Strand 3	C	226	235	anti-parallel
Strand 4	C	77	78	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	68	73	anti-parallel
Strand 3	C	226	235	anti-parallel
Strand 4	C	108	116	anti-parallel
Strand 5	C	143	148	anti-parallel
Strand 6	C	161	166	anti-parallel
Strand 7	C	173	176	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	68	73	anti-parallel
Strand 3	D	226	235	anti-parallel
Strand 4	D	77	78	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	68	73	anti-parallel
Strand 3	D	226	235	anti-parallel
Strand 4	D	108	115	anti-parallel
Strand 5	D	143	148	anti-parallel
Strand 6	D	161	166	anti-parallel
Strand 7	D	174	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UJQ