Analysis of interatomic Contacts of Structural Units in PDB entry:
3UK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UK8 entry

There are 2 chains in PDB entry 3UK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3PRO 642
B
 ILE 434PRO 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3UK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
435 446Right-handed alpha
Helix 2
2
A
456 459Right-handed 310
Helix 3
3
A
493 501Right-handed alpha
Helix 4
4
A
504 518Right-handed alpha
Helix 5
5
A
530 534Right-handed 310
Helix 6
6
A
535 543Right-handed alpha
Helix 7
7
A
546 550Right-handed 310
Helix 8
8
A
557 568Right-handed alpha
Helix 9
9
A
607 613Right-handed alpha
Helix 10
10
A
616 631Right-handed alpha
Helix 11
11
B
435 446Right-handed alpha
Helix 12
12
B
493 501Right-handed alpha
Helix 13
13
B
504 518Right-handed alpha
Helix 14
14
B
530 534Right-handed 310
Helix 15
15
B
535 544Right-handed alpha
Helix 16
16
B
557 568Right-handed alpha
Helix 17
17
B
607 613Right-handed alpha
Helix 18
18
B
616 631Right-handed alpha
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There are 6 sheets in PDB entry 3UK8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 454first strand
Strand 2
A
636 641parallel
Strand 3
A
584 587parallel
Strand 4
A
603 606parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
592 593anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
521 527parallel
Strand 3
A
571 575parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 454first strand
Strand 2
B
636 641parallel
Strand 3
B
584 587parallel
Strand 4
B
603 606parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
463 464first strand
Strand 2
B
592 593anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 471first strand
Strand 2
B
521 527parallel
Strand 3
B
571 575parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il