Analysis of interatomic Contacts of Structural Units in PDB entry:
3UKH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UKH entry

There are 8 chains in PDB entry 3UKH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLU 512
B	THR 2	LEU 511
C	THR 2	GLU 512
D	THR 2	LEU 511
E	THR 2	LEU 511
F	THR 2	GLU 512
G	THR 2	GLU 512
H	THR 2	GLU 512

There are 93 helices in PDB entry 3UKH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	30	Right-handed alpha
Helix 2	2	A	44	47	Right-handed 310
Helix 3	3	A	69	80	Right-handed alpha
Helix 4	4	A	82	84	Right-handed 310
Helix 5	5	A	105	113	Right-handed 310
Helix 6	6	A	114	133	Right-handed alpha
Helix 7	7	A	141	158	Right-handed alpha
Helix 8	8	A	158	168	Right-handed alpha
Helix 9	9	A	170	174	Right-handed 310
Helix 10	10	A	176	180	Right-handed 310
Helix 11	11	A	187	198	Right-handed alpha
Helix 12	12	A	218	227	Right-handed alpha
Helix 13	13	A	228	229	Right-handed 310
Helix 14	14	A	230	232	Right-handed 310
Helix 15	15	A	238	240	Right-handed 310
Helix 16	16	A	270	279	Right-handed alpha
Helix 17	17	A	280	288	Right-handed alpha
Helix 18	18	A	330	334	Right-handed 310
Helix 19	19	A	335	339	Right-handed 310
Helix 20	20	A	386	398	Right-handed alpha
Helix 21	21	A	425	439	Right-handed alpha
Helix 22	22	A	452	456	Right-handed 310
Helix 23	23	A	457	475	Right-handed alpha
Helix 24	24	A	478	483	Right-handed alpha
Helix 25	25	A	483	489	Right-handed alpha
Helix 26	26	A	499	511	Right-handed alpha
Helix 27	27	B	16	30	Right-handed alpha
Helix 28	28	B	44	47	Right-handed 310
Helix 29	29	B	69	80	Right-handed alpha
Helix 30	30	B	82	84	Right-handed 310
Helix 31	31	B	105	113	Right-handed 310
Helix 32	32	B	114	133	Right-handed alpha
Helix 33	33	B	141	151	Right-handed alpha
Helix 34	34	B	151	158	Right-handed alpha
Helix 35	35	B	158	168	Right-handed alpha
Helix 36	36	B	170	174	Right-handed 310
Helix 37	37	B	176	180	Right-handed 310
Helix 38	38	B	187	198	Right-handed alpha
Helix 39	39	B	218	228	Right-handed alpha
Helix 40	40	B	229	232	Right-handed 310
Helix 41	41	B	238	240	Right-handed 310
Helix 42	42	B	270	279	Right-handed alpha
Helix 43	43	B	280	289	Right-handed alpha
Helix 44	44	B	331	334	Right-handed 310
Helix 45	45	B	335	339	Right-handed 310
Helix 46	46	B	386	398	Right-handed alpha
Helix 47	47	B	425	439	Right-handed alpha
Helix 48	48	B	452	456	Right-handed 310
Helix 49	49	B	457	475	Right-handed alpha
Helix 50	50	B	478	483	Right-handed alpha
Helix 51	51	B	483	489	Right-handed alpha
Helix 52	52	B	499	509	Right-handed alpha
Helix 53	53	C	16	30	Right-handed alpha
Helix 54	54	C	44	47	Right-handed 310
Helix 55	55	C	69	80	Right-handed alpha
Helix 56	56	C	82	84	Right-handed 310
Helix 57	57	C	105	113	Right-handed 310
Helix 58	58	C	114	133	Right-handed alpha
Helix 59	59	C	141	158	Right-handed alpha
Helix 60	60	C	158	168	Right-handed alpha
Helix 61	61	C	170	174	Right-handed 310
Helix 62	62	C	176	180	Right-handed 310
Helix 63	63	C	187	198	Right-handed alpha
Helix 64	64	C	218	227	Right-handed alpha
Helix 65	65	C	228	229	Right-handed 310
Helix 66	66	C	230	232	Right-handed 310
Helix 67	67	C	238	240	Right-handed 310
Helix 68	68	C	270	279	Right-handed alpha
Helix 69	69	C	280	289	Right-handed alpha
Helix 70	70	C	331	334	Right-handed 310
Helix 71	71	C	386	398	Right-handed alpha
Helix 72	72	C	425	439	Right-handed alpha
Helix 73	73	C	452	456	Right-handed 310
Helix 74	74	C	457	475	Right-handed alpha
Helix 75	75	C	478	483	Right-handed alpha
Helix 76	76	C	483	489	Right-handed alpha
Helix 77	77	C	499	512	Right-handed alpha
Helix 78	78	D	16	30	Right-handed alpha
Helix 79	79	D	44	47	Right-handed 310
Helix 80	80	D	69	80	Right-handed alpha
Helix 81	81	D	82	84	Right-handed 310
Helix 82	82	D	106	113	Right-handed 310
Helix 83	83	D	114	133	Right-handed alpha
Helix 84	84	D	141	158	Right-handed alpha
Helix 85	85	D	158	168	Right-handed alpha
Helix 86	86	D	170	174	Right-handed 310
Helix 87	87	D	176	180	Right-handed 310
Helix 88	88	D	187	198	Right-handed alpha
Helix 89	89	D	217	227	Right-handed alpha
Helix 90	90	D	228	229	Right-handed 310
Helix 91	91	D	230	232	Right-handed 310
Helix 92	92	D	238	240	Right-handed 310
Helix 93	93	D	270	279	Right-handed alpha

There are 42 sheets in PDB entry 3UKH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	34	38	parallel
Strand 3	A	6	13	parallel
Strand 4	A	259	267	parallel
Strand 5	A	251	254	anti-parallel
Strand 6	A	242	246	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	34	38	parallel
Strand 3	A	6	13	parallel
Strand 4	A	259	267	parallel
Strand 5	A	442	444	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	57	59	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	209	213	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	94	97	anti-parallel
Strand 3	A	315	317	parallel
Strand 4	A	327	329	anti-parallel
Strand 5	A	367	376	anti-parallel
Strand 6	A	292	303	anti-parallel
Strand 7	A	406	420	anti-parallel
Strand 8	A	350	351	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	259	261	parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	242	246	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	34	38	parallel
Strand 3	B	10	13	parallel
Strand 4	B	264	267	parallel
Strand 5	B	442	444	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	57	59	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	209	213	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	93	97	anti-parallel
Strand 3	B	315	317	parallel
Strand 4	B	327	329	anti-parallel
Strand 5	B	367	376	anti-parallel
Strand 6	B	292	303	anti-parallel
Strand 7	B	406	420	anti-parallel
Strand 8	B	350	351	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	236	first strand
Strand 2	C	34	38	parallel
Strand 3	C	6	13	parallel
Strand 4	C	259	267	parallel
Strand 5	C	251	254	anti-parallel
Strand 6	C	242	246	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	236	first strand
Strand 2	C	34	38	parallel
Strand 3	C	6	13	parallel
Strand 4	C	259	267	parallel
Strand 5	C	442	444	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	57	59	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	209	213	anti-parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	103	first strand
Strand 2	C	94	97	anti-parallel
Strand 3	C	315	317	parallel
Strand 4	C	327	329	anti-parallel
Strand 5	C	367	376	anti-parallel
Strand 6	C	292	303	anti-parallel
Strand 7	C	406	420	anti-parallel
Strand 8	C	350	351	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	236	first strand
Strand 2	D	34	38	parallel
Strand 3	D	6	13	parallel
Strand 4	D	259	267	parallel
Strand 5	D	251	254	anti-parallel
Strand 6	D	242	246	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	236	first strand
Strand 2	D	34	38	parallel
Strand 3	D	6	13	parallel
Strand 4	D	259	267	parallel
Strand 5	D	442	444	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	51	first strand
Strand 2	D	57	59	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	209	213	anti-parallel

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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	103	first strand
Strand 2	D	94	97	anti-parallel
Strand 3	D	315	317	parallel
Strand 4	D	327	329	anti-parallel
Strand 5	D	367	376	anti-parallel
Strand 6	D	292	303	anti-parallel
Strand 7	D	406	420	anti-parallel
Strand 8	D	350	351	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	259	261	parallel
Strand 3	E	251	254	anti-parallel
Strand 4	E	242	246	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	236	first strand
Strand 2	E	34	38	parallel
Strand 3	E	10	13	parallel
Strand 4	E	264	267	parallel
Strand 5	E	442	444	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	51	first strand
Strand 2	E	57	59	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	90	first strand
Strand 2	E	209	213	anti-parallel

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There are 8 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	103	first strand
Strand 2	E	93	97	anti-parallel
Strand 3	E	315	317	parallel
Strand 4	E	327	329	anti-parallel
Strand 5	E	367	376	anti-parallel
Strand 6	E	292	303	anti-parallel
Strand 7	E	406	420	anti-parallel
Strand 8	E	350	351	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	345	346	first strand
Strand 2	E	363	364	anti-parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	236	first strand
Strand 2	F	34	38	parallel
Strand 3	F	6	13	parallel
Strand 4	F	259	267	parallel
Strand 5	F	251	254	anti-parallel
Strand 6	F	242	246	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	236	first strand
Strand 2	F	34	38	parallel
Strand 3	F	6	13	parallel
Strand 4	F	259	267	parallel
Strand 5	F	442	444	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	51	first strand
Strand 2	F	57	59	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	90	first strand
Strand 2	F	209	213	anti-parallel

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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	103	first strand
Strand 2	F	93	97	anti-parallel
Strand 3	F	315	317	parallel
Strand 4	F	327	329	anti-parallel
Strand 5	F	367	376	anti-parallel
Strand 6	F	292	303	anti-parallel
Strand 7	F	406	420	anti-parallel
Strand 8	F	350	351	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	7	first strand
Strand 2	G	259	261	parallel
Strand 3	G	251	254	anti-parallel
Strand 4	G	242	246	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	234	236	first strand
Strand 2	G	34	38	parallel
Strand 3	G	10	13	parallel
Strand 4	G	264	267	parallel
Strand 5	G	442	444	parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	51	first strand
Strand 2	G	57	59	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	90	first strand
Strand 2	G	209	213	anti-parallel

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There are 8 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	103	first strand
Strand 2	G	93	97	anti-parallel
Strand 3	G	315	317	parallel
Strand 4	G	327	329	anti-parallel
Strand 5	G	367	376	anti-parallel
Strand 6	G	292	303	anti-parallel
Strand 7	G	406	420	anti-parallel
Strand 8	G	350	351	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	347	first strand
Strand 2	G	362	363	anti-parallel

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There are 6 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	234	236	first strand
Strand 2	H	34	38	parallel
Strand 3	H	6	13	parallel
Strand 4	H	259	267	parallel
Strand 5	H	251	254	anti-parallel
Strand 6	H	242	246	anti-parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	234	236	first strand
Strand 2	H	34	38	parallel
Strand 3	H	6	13	parallel
Strand 4	H	259	267	parallel
Strand 5	H	442	444	parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	57	59	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	90	first strand
Strand 2	H	209	213	anti-parallel

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There are 8 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	103	first strand
Strand 2	H	94	97	anti-parallel
Strand 3	H	315	317	parallel
Strand 4	H	327	329	anti-parallel
Strand 5	H	367	376	anti-parallel
Strand 6	H	292	303	anti-parallel
Strand 7	H	406	420	anti-parallel
Strand 8	H	350	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UKH

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UKH