Analysis of interatomic Contacts of Structural Units in PDB entry:
3UKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UKI entry

There are 4 chains in PDB entry 3UKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 91LEU 307
B
 ARG 92LEU 307
C
 ARG 92ALA 308
D
 LEU 93GLU 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3UKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
101 117Right-handed alpha
Helix 2
2
A
128 139Right-handed alpha
Helix 3
3
A
173 178Right-handed 310
Helix 4
4
A
197 205Right-handed alpha
Helix 5
5
A
224 235Right-handed alpha
Helix 6
6
A
244 249Right-handed 310
Helix 7
7
A
250 255Right-handed alpha
Helix 8
8
A
279 294Right-handed alpha
Helix 9
9
A
295 300Right-handed 310
Helix 10
10
B
101 116Right-handed alpha
Helix 11
11
B
128 139Right-handed alpha
Helix 12
12
B
173 178Right-handed 310
Helix 13
13
B
200 205Right-handed alpha
Helix 14
14
B
224 235Right-handed alpha
Helix 15
15
B
243 247Right-handed alpha
Helix 16
16
B
250 255Right-handed alpha
Helix 17
17
B
280 294Right-handed alpha
Helix 18
18
B
295 299Right-handed 310
Helix 19
19
C
101 116Right-handed alpha
Helix 20
20
C
129 130Right-handed 310
Helix 21
21
C
132 132Right-handed 310
Helix 22
22
C
133 139Right-handed alpha
Helix 23
23
C
173 178Right-handed 310
Helix 24
24
C
200 208Right-handed alpha
Helix 25
25
C
224 235Right-handed alpha
Helix 26
26
C
244 249Right-handed 310
Helix 27
27
C
250 255Right-handed alpha
Helix 28
28
C
279 293Right-handed alpha
Helix 29
29
D
101 117Right-handed alpha
Helix 30
30
D
128 139Right-handed alpha
Helix 31
31
D
173 178Right-handed 310
Helix 32
32
D
200 206Right-handed alpha
Helix 33
33
D
224 235Right-handed alpha
Helix 34
34
D
244 249Right-handed 310
Helix 35
35
D
250 256Right-handed alpha
Helix 36
36
D
279 292Right-handed alpha
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There are 7 sheets in PDB entry 3UKI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 242first strand
Strand 2
A
156 169anti-parallel
Strand 3
A
264 273anti-parallel
Strand 4
A
305 306parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
156 169anti-parallel
Strand 3
A
264 273anti-parallel
Strand 4
A
143 146anti-parallel
Strand 5
A
95 97parallel
Strand 6
A
124 126parallel
Strand 7
B
220 221parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
B
123 126parallel
Strand 3
B
94 97parallel
Strand 4
B
143 146parallel
Strand 5
B
266 274anti-parallel
Strand 6
B
155 169anti-parallel
Strand 7
B
238 242anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 242first strand
Strand 2
C
155 169anti-parallel
Strand 3
C
264 274anti-parallel
Strand 4
C
305 306parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 259first strand
Strand 2
C
155 169anti-parallel
Strand 3
C
264 274anti-parallel
Strand 4
C
143 146anti-parallel
Strand 5
C
95 97parallel
Strand 6
C
124 126parallel
Strand 7
D
220 221parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 221first strand
Strand 2
D
124 126parallel
Strand 3
D
95 97parallel
Strand 4
D
143 146parallel
Strand 5
D
266 273anti-parallel
Strand 6
D
156 169anti-parallel
Strand 7
D
238 242anti-parallel
Strand 8
D
191 192parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 221first strand
Strand 2
D
124 126parallel
Strand 3
D
95 97parallel
Strand 4
D
143 146parallel
Strand 5
D
266 273anti-parallel
Strand 6
D
156 169anti-parallel
Strand 7
D
257 258anti-parallel
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