Analysis of interatomic Contacts of Structural Units in PDB entry:
3UKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UKQ entry

There are 4 chains in PDB entry 3UKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 511
B
 THR 2LEU 511
C
 THR 2LEU 511
D
 THR 2LEU 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 3UKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
69 80Right-handed alpha
Helix 4
4
A
82 84Right-handed 310
Helix 5
5
A
105 113Right-handed 310
Helix 6
6
A
114 133Right-handed alpha
Helix 7
7
A
141 150Right-handed alpha
Helix 8
8
A
151 158Right-handed alpha
Helix 9
9
A
158 168Right-handed alpha
Helix 10
10
A
187 198Right-handed alpha
Helix 11
11
A
218 227Right-handed alpha
Helix 12
12
A
228 229Right-handed 310
Helix 13
13
A
230 232Right-handed 310
Helix 14
14
A
238 240Right-handed 310
Helix 15
15
A
270 279Right-handed alpha
Helix 16
16
A
280 288Right-handed alpha
Helix 17
17
A
332 334Right-handed 310
Helix 18
18
A
383 398Right-handed alpha
Helix 19
19
A
425 439Right-handed alpha
Helix 20
20
A
452 456Right-handed 310
Helix 21
21
A
457 475Right-handed alpha
Helix 22
22
A
478 483Right-handed alpha
Helix 23
23
A
483 489Right-handed alpha
Helix 24
24
A
499 510Right-handed alpha
Helix 25
25
B
16 30Right-handed alpha
Helix 26
26
B
44 48Right-handed 310
Helix 27
27
B
69 80Right-handed alpha
Helix 28
28
B
82 84Right-handed 310
Helix 29
29
B
105 113Right-handed 310
Helix 30
30
B
114 133Right-handed alpha
Helix 31
31
B
141 150Right-handed alpha
Helix 32
32
B
151 158Right-handed alpha
Helix 33
33
B
158 168Right-handed alpha
Helix 34
34
B
187 198Right-handed alpha
Helix 35
35
B
216 227Right-handed alpha
Helix 36
36
B
228 229Right-handed 310
Helix 37
37
B
230 232Right-handed 310
Helix 38
38
B
238 240Right-handed 310
Helix 39
39
B
270 279Right-handed alpha
Helix 40
40
B
280 288Right-handed alpha
Helix 41
41
B
331 334Right-handed 310
Helix 42
42
B
383 398Right-handed alpha
Helix 43
43
B
425 439Right-handed alpha
Helix 44
44
B
452 456Right-handed 310
Helix 45
45
B
457 475Right-handed alpha
Helix 46
46
B
478 483Right-handed alpha
Helix 47
47
B
483 489Right-handed alpha
Helix 48
48
B
499 509Right-handed alpha
Helix 49
49
C
16 30Right-handed alpha
Helix 50
50
C
44 48Right-handed 310
Helix 51
51
C
69 80Right-handed alpha
Helix 52
52
C
82 84Right-handed 310
Helix 53
53
C
105 113Right-handed 310
Helix 54
54
C
114 133Right-handed alpha
Helix 55
55
C
141 150Right-handed alpha
Helix 56
56
C
151 158Right-handed alpha
Helix 57
57
C
158 168Right-handed alpha
Helix 58
58
C
187 198Right-handed alpha
Helix 59
59
C
216 227Right-handed alpha
Helix 60
60
C
228 229Right-handed 310
Helix 61
61
C
230 232Right-handed 310
Helix 62
62
C
238 240Right-handed 310
Helix 63
63
C
270 279Right-handed alpha
Helix 64
64
C
280 288Right-handed alpha
Helix 65
65
C
331 334Right-handed 310
Helix 66
66
C
383 398Right-handed alpha
Helix 67
67
C
425 439Right-handed alpha
Helix 68
68
C
452 456Right-handed 310
Helix 69
69
C
457 475Right-handed alpha
Helix 70
70
C
478 483Right-handed alpha
Helix 71
71
C
483 489Right-handed alpha
Helix 72
72
C
499 509Right-handed alpha
Helix 73
73
D
16 30Right-handed alpha
Helix 74
74
D
44 48Right-handed 310
Helix 75
75
D
69 80Right-handed alpha
Helix 76
76
D
82 84Right-handed 310
Helix 77
77
D
105 113Right-handed 310
Helix 78
78
D
114 133Right-handed alpha
Helix 79
79
D
141 150Right-handed alpha
Helix 80
80
D
151 158Right-handed alpha
Helix 81
81
D
158 168Right-handed alpha
Helix 82
82
D
187 198Right-handed alpha
Helix 83
83
D
218 227Right-handed alpha
Helix 84
84
D
228 229Right-handed 310
Helix 85
85
D
230 232Right-handed 310
Helix 86
86
D
238 240Right-handed 310
Helix 87
87
D
270 279Right-handed alpha
Helix 88
88
D
280 288Right-handed alpha
Helix 89
89
D
331 334Right-handed 310
Helix 90
90
D
383 398Right-handed alpha
Helix 91
91
D
425 439Right-handed alpha
Helix 92
92
D
452 456Right-handed 310
Helix 93
93
D
457 475Right-handed alpha
Helix 94
94
D
478 483Right-handed alpha
Helix 95
95
D
483 489Right-handed alpha
Helix 96
96
D
499 509Right-handed alpha
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There are 21 sheets in PDB entry 3UKQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
259 261parallel
Strand 3
A
251 254anti-parallel
Strand 4
A
242 246anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 236first strand
Strand 2
A
34 38parallel
Strand 3
A
10 13parallel
Strand 4
A
264 267parallel
Strand 5
A
442 444parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
57 58anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
209 213anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
93 96anti-parallel
Strand 3
A
315 317parallel
Strand 4
A
327 330anti-parallel
Strand 5
A
367 376anti-parallel
Strand 6
A
292 303anti-parallel
Strand 7
A
406 420anti-parallel
Strand 8
A
350 351anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
259 261parallel
Strand 3
B
251 254anti-parallel
Strand 4
B
242 246anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 236first strand
Strand 2
B
34 38parallel
Strand 3
B
10 13parallel
Strand 4
B
264 267parallel
Strand 5
B
442 444parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
57 58anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
209 213anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
93 96anti-parallel
Strand 3
B
315 317parallel
Strand 4
B
327 329anti-parallel
Strand 5
B
367 376anti-parallel
Strand 6
B
292 303anti-parallel
Strand 7
B
406 420anti-parallel
Strand 8
B
350 351anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 347first strand
Strand 2
B
362 363anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 236first strand
Strand 2
C
34 38parallel
Strand 3
C
6 13parallel
Strand 4
C
259 267parallel
Strand 5
C
251 254anti-parallel
Strand 6
C
242 246anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 236first strand
Strand 2
C
34 38parallel
Strand 3
C
6 13parallel
Strand 4
C
259 267parallel
Strand 5
C
442 444parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
57 58anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
209 213anti-parallel
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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 103first strand
Strand 2
C
93 96anti-parallel
Strand 3
C
315 317parallel
Strand 4
C
327 329anti-parallel
Strand 5
C
367 376anti-parallel
Strand 6
C
292 303anti-parallel
Strand 7
C
406 420anti-parallel
Strand 8
C
350 351anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
234 236first strand
Strand 2
D
34 38parallel
Strand 3
D
6 13parallel
Strand 4
D
259 267parallel
Strand 5
D
251 254anti-parallel
Strand 6
D
242 246anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
234 236first strand
Strand 2
D
34 38parallel
Strand 3
D
6 13parallel
Strand 4
D
259 267parallel
Strand 5
D
442 444parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 51first strand
Strand 2
D
57 58anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 90first strand
Strand 2
D
209 213anti-parallel
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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 103first strand
Strand 2
D
93 96anti-parallel
Strand 3
D
315 317parallel
Strand 4
D
327 329anti-parallel
Strand 5
D
367 376anti-parallel
Strand 6
D
292 303anti-parallel
Strand 7
D
406 420anti-parallel
Strand 8
D
350 351anti-parallel
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