Analysis of interatomic Contacts of Structural Units in PDB entry:
3UKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UKV entry

There are 4 chains in PDB entry 3UKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 548ARG 743
A
 SER 550GLU 744
C
 TYR 552GLU 744
D
 ARG 549SER 712
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3UKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
550 566Right-handed alpha
Helix 2
2
B
569 584Right-handed alpha
Helix 3
3
B
585 589Right-handed 310
Helix 4
4
B
600 609Right-handed alpha
Helix 5
5
B
614 622Right-handed 310
Helix 6
6
B
625 634Right-handed alpha
Helix 7
7
B
713 723Right-handed alpha
Helix 8
8
B
723 738Right-handed alpha
Helix 9
9
A
551 566Right-handed alpha
Helix 10
10
A
569 584Right-handed alpha
Helix 11
11
A
585 590Right-handed 310
Helix 12
12
A
600 610Right-handed alpha
Helix 13
13
A
613 622Right-handed 310
Helix 14
14
A
625 635Right-handed alpha
Helix 15
15
A
713 723Right-handed alpha
Helix 16
16
A
723 737Right-handed alpha
Helix 17
17
C
553 565Right-handed alpha
Helix 18
18
C
569 583Right-handed alpha
Helix 19
19
C
585 590Right-handed 310
Helix 20
20
C
600 609Right-handed alpha
Helix 21
21
C
614 622Right-handed 310
Helix 22
22
C
625 634Right-handed alpha
Helix 23
23
C
713 723Right-handed alpha
Helix 24
24
C
723 738Right-handed alpha
Helix 25
25
D
550 564Right-handed alpha
Helix 26
26
D
569 583Right-handed alpha
Helix 27
27
D
585 590Right-handed 310
Helix 28
28
D
630 634Right-handed alpha
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There are 8 sheets in PDB entry 3UKV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
637 641first strand
Strand 2
B
706 712anti-parallel
Strand 3
B
656 662anti-parallel
Strand 4
B
682 684anti-parallel
Strand 5
B
740 741parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
646 648first strand
Strand 2
B
699 702anti-parallel
Strand 3
B
665 668anti-parallel
Strand 4
B
673 677anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 641first strand
Strand 2
A
706 712anti-parallel
Strand 3
A
656 662anti-parallel
Strand 4
A
682 684anti-parallel
Strand 5
A
738 741parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 648first strand
Strand 2
A
699 702anti-parallel
Strand 3
A
665 669anti-parallel
Strand 4
A
672 677anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
637 641first strand
Strand 2
C
706 712anti-parallel
Strand 3
C
656 662anti-parallel
Strand 4
C
682 684anti-parallel
Strand 5
C
740 741parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
646 648first strand
Strand 2
C
699 702anti-parallel
Strand 3
C
665 668anti-parallel
Strand 4
C
673 677anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
637 641first strand
Strand 2
D
706 711anti-parallel
Strand 3
D
657 662anti-parallel
Strand 4
D
682 683anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
646 648first strand
Strand 2
D
700 702anti-parallel
Strand 3
D
665 666anti-parallel
Strand 4
D
676 677anti-parallel
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