Analysis of interatomic Contacts of Structural Units in PDB entry:
3UL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UL8 entry

There is 1 chain in PDB entry 3UL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27THR 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3UL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
140 144Right-handed 310
Helix 2
2
A
168 174Right-handed 310
Helix 3
3
A
195 199Right-handed 310
Helix 4
4
A
269 279Right-handed alpha
Helix 5
5
A
295 299Right-handed 310
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There are 3 sheets in PDB entry 3UL8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
37 39anti-parallel
Strand 3
A
58 60parallel
Strand 4
A
82 84parallel
Strand 5
A
106 108parallel
Strand 6
A
130 132parallel
Strand 7
A
154 156parallel
Strand 8
A
179 181parallel
Strand 9
A
206 209parallel
Strand 10
A
228 232parallel
Strand 11
A
254 256parallel
Strand 12
A
283 284parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
92 93parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
217 218parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il