Analysis of interatomic Contacts of Structural Units in PDB entry:
3ULF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ULF entry

There are 6 chains in PDB entry 3ULF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 202TYR 336
B
 SER 207ILE 334
C
 GLN 216GLU 335
D
 TYR 206ILE 334
E
 GLU 202TYR 336
F
 LEU 208ILE 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 3ULF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
206 214Right-handed alpha
Helix 2
2
A
235 243Right-handed alpha
Helix 3
3
A
245 250Right-handed alpha
Helix 4
4
A
253 258Right-handed 310
Helix 5
5
A
263 276Right-handed alpha
Helix 6
6
A
321 333Right-handed alpha
Helix 7
7
A
334 336Right-handed 310
Helix 8
8
B
208 214Right-handed alpha
Helix 9
9
B
235 243Right-handed alpha
Helix 10
10
B
245 249Right-handed 310
Helix 11
11
B
253 258Right-handed 310
Helix 12
12
B
263 276Right-handed alpha
Helix 13
13
B
321 333Right-handed alpha
Helix 14
14
C
235 243Right-handed alpha
Helix 15
15
C
246 250Right-handed 310
Helix 16
16
C
253 258Right-handed 310
Helix 17
17
C
265 277Right-handed alpha
Helix 18
18
C
321 333Right-handed alpha
Helix 19
19
D
207 214Right-handed alpha
Helix 20
20
D
235 243Right-handed alpha
Helix 21
21
D
253 258Right-handed 310
Helix 22
22
D
263 277Right-handed alpha
Helix 23
23
D
321 333Right-handed alpha
Helix 24
24
E
206 214Right-handed alpha
Helix 25
25
E
235 243Right-handed alpha
Helix 26
26
E
245 249Right-handed 310
Helix 27
27
E
253 258Right-handed 310
Helix 28
28
E
263 276Right-handed alpha
Helix 29
29
E
321 333Right-handed alpha
Helix 30
30
F
208 212Right-handed 310
Helix 31
31
F
235 243Right-handed alpha
Helix 32
32
F
245 249Right-handed 310
Helix 33
33
F
253 258Right-handed 310
Helix 34
34
F
263 277Right-handed alpha
Helix 35
35
F
321 333Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 3ULF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
310 316anti-parallel
Strand 4
A
293 304anti-parallel
Strand 5
A
280 287anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
310 316anti-parallel
Strand 4
A
293 304anti-parallel
Strand 5
A
319 320anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
219 223anti-parallel
Strand 3
B
310 316anti-parallel
Strand 4
B
293 304anti-parallel
Strand 5
B
280 287anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
219 223anti-parallel
Strand 3
B
310 316anti-parallel
Strand 4
B
293 304anti-parallel
Strand 5
B
319 320anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 234first strand
Strand 2
C
218 223anti-parallel
Strand 3
C
310 317anti-parallel
Strand 4
C
293 304anti-parallel
Strand 5
C
280 287anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
231 234first strand
Strand 2
D
219 222anti-parallel
Strand 3
D
310 316anti-parallel
Strand 4
D
293 304anti-parallel
Strand 5
D
280 287anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
231 234first strand
Strand 2
E
219 223anti-parallel
Strand 3
E
310 316anti-parallel
Strand 4
E
293 304anti-parallel
Strand 5
E
280 287anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
231 234first strand
Strand 2
E
219 223anti-parallel
Strand 3
E
310 316anti-parallel
Strand 4
E
293 304anti-parallel
Strand 5
E
319 320anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
231 234first strand
Strand 2
F
219 223anti-parallel
Strand 3
F
310 320anti-parallel
Strand 4
F
293 304anti-parallel
Strand 5
F
280 287anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il