Analysis of interatomic Contacts of Structural Units in PDB entry:
3UM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UM9 entry

There are 2 chains in PDB entry 3UM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PRO 224
B
 GLY 0PRO 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3UM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 20Right-handed 310
Helix 2
2
A
21 29Right-handed alpha
Helix 3
3
A
32 55Right-handed alpha
Helix 4
4
A
59 76Right-handed alpha
Helix 5
5
A
80 91Right-handed alpha
Helix 6
6
A
99 110Right-handed alpha
Helix 7
7
A
121 132Right-handed alpha
Helix 8
8
A
133 138Right-handed 310
Helix 9
9
A
145 147Right-handed 310
Helix 10
10
A
153 165Right-handed alpha
Helix 11
11
A
167 169Right-handed 310
Helix 12
12
A
177 188Right-handed alpha
Helix 13
13
A
214 221Right-handed alpha
Helix 14
14
B
21 29Right-handed alpha
Helix 15
15
B
32 55Right-handed alpha
Helix 16
16
B
59 76Right-handed alpha
Helix 17
17
B
80 91Right-handed alpha
Helix 18
18
B
92 94Right-handed 310
Helix 19
19
B
99 109Right-handed alpha
Helix 20
20
B
121 132Right-handed alpha
Helix 21
21
B
133 138Right-handed 310
Helix 22
22
B
145 147Right-handed 310
Helix 23
23
B
153 165Right-handed alpha
Helix 24
24
B
167 169Right-handed 310
Helix 25
25
B
177 188Right-handed alpha
Helix 26
26
B
214 220Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3UM9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
113 118parallel
Strand 3
A
6 9parallel
Strand 4
A
171 175parallel
Strand 5
A
191 194parallel
Strand 6
A
210 212parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 143first strand
Strand 2
B
113 118parallel
Strand 3
B
6 9parallel
Strand 4
B
171 175parallel
Strand 5
B
191 194parallel
Strand 6
B
210 212parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
95 96anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il