Analysis of interatomic Contacts of Structural Units in PDB entry:
3UMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UMA entry

There are 3 chains in PDB entry 3UMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -4LEU 161
B
 MSE 1LEU 161
C
 ASN -6LEU 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3UMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 32Right-handed alpha
Helix 2
2
A
46 52Right-handed alpha
Helix 3
3
A
52 60Right-handed alpha
Helix 4
4
A
60 66Right-handed alpha
Helix 5
5
A
79 90Right-handed alpha
Helix 6
6
A
104 110Right-handed alpha
Helix 7
7
A
117 120Right-handed 310
Helix 8
8
A
153 161Right-handed alpha
Helix 9
9
B
27 32Right-handed alpha
Helix 10
10
B
46 52Right-handed alpha
Helix 11
11
B
52 60Right-handed alpha
Helix 12
12
B
60 66Right-handed alpha
Helix 13
13
B
79 90Right-handed alpha
Helix 14
14
B
104 110Right-handed alpha
Helix 15
15
B
117 120Right-handed 310
Helix 16
16
B
153 161Right-handed alpha
Helix 17
17
C
27 32Right-handed alpha
Helix 18
18
C
46 52Right-handed alpha
Helix 19
19
C
52 60Right-handed alpha
Helix 20
20
C
60 67Right-handed alpha
Helix 21
21
C
79 90Right-handed alpha
Helix 22
22
C
104 110Right-handed alpha
Helix 23
23
C
117 120Right-handed 310
Helix 24
24
C
153 161Right-handed alpha
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There are 9 sheets in PDB entry 3UMA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 18first strand
Strand 2
A
21 26anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
71 76parallel
Strand 3
A
35 40parallel
Strand 4
A
128 133anti-parallel
Strand 5
A
136 142anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
123 125anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
21 26anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
71 76parallel
Strand 3
B
35 40parallel
Strand 4
B
128 133anti-parallel
Strand 5
B
136 142anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 115first strand
Strand 2
B
123 125anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 18first strand
Strand 2
C
21 26anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 100first strand
Strand 2
C
71 76parallel
Strand 3
C
35 40parallel
Strand 4
C
128 133anti-parallel
Strand 5
C
136 142anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 115first strand
Strand 2
C
123 125anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il