Analysis of interatomic Contacts of Structural Units in PDB entry:
3UMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UMC entry

There are 4 chains in PDB entry 3UMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -4ALA 231
B
 GLY 0ALA 233
C
 GLY 0SER 232
D
 GLY 0ALA 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3UMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
35 47Right-handed alpha
Helix 3
3
A
47 56Right-handed alpha
Helix 4
4
A
63 79Right-handed alpha
Helix 5
5
A
84 93Right-handed alpha
Helix 6
6
A
94 97Right-handed 310
Helix 7
7
A
103 112Right-handed alpha
Helix 8
8
A
124 136Right-handed alpha
Helix 9
9
A
144 149Right-handed alpha
Helix 10
10
A
154 166Right-handed alpha
Helix 11
11
A
168 170Right-handed 310
Helix 12
12
A
178 188Right-handed alpha
Helix 13
13
A
221 231Right-handed alpha
Helix 14
14
B
15 31Right-handed alpha
Helix 15
15
B
35 46Right-handed alpha
Helix 16
16
B
46 56Right-handed alpha
Helix 17
17
B
63 78Right-handed alpha
Helix 18
18
B
84 93Right-handed alpha
Helix 19
19
B
94 97Right-handed 310
Helix 20
20
B
103 115Right-handed alpha
Helix 21
21
B
124 136Right-handed alpha
Helix 22
22
B
145 149Right-handed alpha
Helix 23
23
B
154 166Right-handed alpha
Helix 24
24
B
168 170Right-handed 310
Helix 25
25
B
178 188Right-handed alpha
Helix 26
26
B
221 233Right-handed alpha
Helix 27
27
C
15 28Right-handed alpha
Helix 28
28
C
35 56Right-handed alpha
Helix 29
29
C
63 79Right-handed alpha
Helix 30
30
C
84 93Right-handed alpha
Helix 31
31
C
94 97Right-handed 310
Helix 32
32
C
103 115Right-handed alpha
Helix 33
33
C
124 136Right-handed alpha
Helix 34
34
C
145 149Right-handed alpha
Helix 35
35
C
154 165Right-handed alpha
Helix 36
36
C
168 170Right-handed 310
Helix 37
37
C
178 188Right-handed alpha
Helix 38
38
C
221 232Right-handed alpha
Helix 39
39
D
15 28Right-handed alpha
Helix 40
40
D
35 57Right-handed alpha
Helix 41
41
D
63 79Right-handed alpha
Helix 42
42
D
84 93Right-handed alpha
Helix 43
43
D
94 97Right-handed 310
Helix 44
44
D
103 112Right-handed alpha
Helix 45
45
D
124 136Right-handed alpha
Helix 46
46
D
145 149Right-handed alpha
Helix 47
47
D
154 166Right-handed alpha
Helix 48
48
D
168 170Right-handed 310
Helix 49
49
D
178 188Right-handed alpha
Helix 50
50
D
221 230Right-handed alpha
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There are 8 sheets in PDB entry 3UMC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
116 119parallel
Strand 3
A
3 6parallel
Strand 4
A
172 176parallel
Strand 5
A
191 195parallel
Strand 6
A
217 219parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
99 100anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
116 121parallel
Strand 3
B
3 6parallel
Strand 4
B
172 176parallel
Strand 5
B
191 195parallel
Strand 6
B
217 219parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
99 100anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
141 144first strand
Strand 2
C
116 121parallel
Strand 3
C
3 6parallel
Strand 4
C
172 176parallel
Strand 5
C
191 195parallel
Strand 6
C
217 219parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
99 100anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
141 144first strand
Strand 2
D
116 121parallel
Strand 3
D
3 6parallel
Strand 4
D
172 176parallel
Strand 5
D
191 194parallel
Strand 6
D
217 218parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
99 100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il