Analysis of interatomic Contacts of Structural Units in PDB entry:
3UMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UMF entry

There is 1 chain in PDB entry 3UMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4LYS 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3UMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
39 49Right-handed alpha
Helix 3
3
A
52 65Right-handed alpha
Helix 4
4
A
69 85Right-handed alpha
Helix 5
5
A
99 110Right-handed alpha
Helix 6
6
A
122 131Right-handed alpha
Helix 7
7
A
141 158Right-handed alpha
Helix 8
8
A
158 167Right-handed alpha
Helix 9
9
A
179 193Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3UMF.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
90 93parallel
Strand 3
A
10 15parallel
Strand 4
A
115 120parallel
Strand 5
A
171 175parallel
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