Analysis of interatomic Contacts of Structural Units in PDB entry:
3UMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3UMG entry

There are 8 chains in PDB entry 3UMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	SER 250
B	GLY 3	GLY 249
C	VAL 4	ALA 248
D	GLY 3	SER 250
E	VAL 4	THR 251
F	VAL 4	ALA 248
G	VAL 4	GLY 249
H	PRO 5	GLY 249

There are109 helices in PDB entry 3UMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	28	44	Right-handed alpha
Helix 2	2	A	49	59	Right-handed alpha
Helix 3	3	A	60	70	Right-handed alpha
Helix 4	4	A	77	93	Right-handed alpha
Helix 5	5	A	96	100	Right-handed 310
Helix 6	6	A	101	110	Right-handed alpha
Helix 7	7	A	111	114	Right-handed 310
Helix 8	8	A	120	132	Right-handed alpha
Helix 9	9	A	141	153	Right-handed alpha
Helix 10	10	A	161	166	Right-handed alpha
Helix 11	11	A	171	182	Right-handed alpha
Helix 12	12	A	185	187	Right-handed 310
Helix 13	13	A	195	205	Right-handed alpha
Helix 14	14	A	238	249	Right-handed alpha
Helix 15	15	B	29	44	Right-handed alpha
Helix 16	16	B	49	60	Right-handed alpha
Helix 17	17	B	60	70	Right-handed alpha
Helix 18	18	B	77	93	Right-handed alpha
Helix 19	19	B	96	100	Right-handed 310
Helix 20	20	B	101	110	Right-handed alpha
Helix 21	21	B	111	114	Right-handed 310
Helix 22	22	B	120	130	Right-handed alpha
Helix 23	23	B	141	153	Right-handed alpha
Helix 24	24	B	161	166	Right-handed alpha
Helix 25	25	B	171	182	Right-handed alpha
Helix 26	26	B	185	187	Right-handed 310
Helix 27	27	B	195	205	Right-handed alpha
Helix 28	28	B	238	249	Right-handed alpha
Helix 29	29	C	28	44	Right-handed alpha
Helix 30	30	C	49	60	Right-handed alpha
Helix 31	31	C	60	70	Right-handed alpha
Helix 32	32	C	77	92	Right-handed alpha
Helix 33	33	C	101	110	Right-handed alpha
Helix 34	34	C	111	114	Right-handed 310
Helix 35	35	C	120	130	Right-handed alpha
Helix 36	36	C	141	153	Right-handed alpha
Helix 37	37	C	161	166	Right-handed alpha
Helix 38	38	C	171	182	Right-handed alpha
Helix 39	39	C	185	187	Right-handed 310
Helix 40	40	C	195	205	Right-handed alpha
Helix 41	41	C	238	248	Right-handed alpha
Helix 42	42	D	28	44	Right-handed alpha
Helix 43	43	D	49	60	Right-handed alpha
Helix 44	44	D	60	70	Right-handed alpha
Helix 45	45	D	77	93	Right-handed alpha
Helix 46	46	D	96	100	Right-handed 310
Helix 47	47	D	101	110	Right-handed alpha
Helix 48	48	D	111	114	Right-handed 310
Helix 49	49	D	120	130	Right-handed alpha
Helix 50	50	D	141	153	Right-handed alpha
Helix 51	51	D	161	166	Right-handed alpha
Helix 52	52	D	171	183	Right-handed alpha
Helix 53	53	D	185	187	Right-handed 310
Helix 54	54	D	195	205	Right-handed alpha
Helix 55	55	D	238	249	Right-handed alpha
Helix 56	56	E	29	44	Right-handed alpha
Helix 57	57	E	49	59	Right-handed alpha
Helix 58	58	E	60	70	Right-handed alpha
Helix 59	59	E	77	94	Right-handed alpha
Helix 60	60	E	96	100	Right-handed 310
Helix 61	61	E	101	110	Right-handed alpha
Helix 62	62	E	111	114	Right-handed 310
Helix 63	63	E	120	132	Right-handed alpha
Helix 64	64	E	141	153	Right-handed alpha
Helix 65	65	E	161	166	Right-handed alpha
Helix 66	66	E	171	182	Right-handed alpha
Helix 67	67	E	185	187	Right-handed 310
Helix 68	68	E	195	206	Right-handed alpha
Helix 69	69	E	238	249	Right-handed alpha
Helix 70	70	F	29	44	Right-handed alpha
Helix 71	71	F	49	71	Right-handed alpha
Helix 72	72	F	77	92	Right-handed alpha
Helix 73	73	F	96	100	Right-handed 310
Helix 74	74	F	101	110	Right-handed alpha
Helix 75	75	F	111	114	Right-handed 310
Helix 76	76	F	120	130	Right-handed alpha
Helix 77	77	F	141	153	Right-handed alpha
Helix 78	78	F	161	166	Right-handed alpha
Helix 79	79	F	171	182	Right-handed alpha
Helix 80	80	F	185	187	Right-handed 310
Helix 81	81	F	195	205	Right-handed alpha
Helix 82	82	F	238	248	Right-handed alpha
Helix 83	83	G	29	44	Right-handed alpha
Helix 84	84	G	49	60	Right-handed alpha
Helix 85	85	G	60	71	Right-handed alpha
Helix 86	86	G	77	93	Right-handed alpha
Helix 87	87	G	96	100	Right-handed 310
Helix 88	88	G	101	110	Right-handed alpha
Helix 89	89	G	111	114	Right-handed 310
Helix 90	90	G	120	132	Right-handed alpha
Helix 91	91	G	141	153	Right-handed alpha
Helix 92	92	G	161	166	Right-handed alpha
Helix 93	93	G	171	183	Right-handed alpha
Helix 94	94	G	185	187	Right-handed 310
Helix 95	95	G	195	205	Right-handed alpha
Helix 96	96	G	238	249	Right-handed alpha
Helix 97	97	H	28	44	Right-handed alpha
Helix 98	98	H	49	71	Right-handed alpha
Helix 99	99	H	77	93	Right-handed alpha
Helix 100	100	H	96	100	Right-handed 310
Helix 101	101	H	101	110	Right-handed alpha
Helix 102	102	H	111	114	Right-handed 310
Helix 103	103	H	120	130	Right-handed alpha
Helix 104	104	H	141	153	Right-handed alpha
Helix 105	105	H	161	166	Right-handed alpha
Helix 106	106	H	171	182	Right-handed alpha
Helix 107	107	H	185	187	Right-handed 310
Helix 108	108	H	195	206	Right-handed alpha
Helix 109	109	H	238	249	Right-handed alpha

There are 12 sheets in PDB entry 3UMG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	17	20	parallel
Strand 3	A	189	193	parallel
Strand 4	A	208	212	parallel
Strand 5	A	234	236	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	136	first strand
Strand 2	B	17	20	parallel
Strand 3	B	189	193	parallel
Strand 4	B	208	212	parallel
Strand 5	B	234	236	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	116	117	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	136	first strand
Strand 2	C	17	20	parallel
Strand 3	C	189	193	parallel
Strand 4	C	208	212	parallel
Strand 5	C	234	236	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	136	first strand
Strand 2	D	17	20	parallel
Strand 3	D	189	193	parallel
Strand 4	D	208	212	parallel
Strand 5	D	234	236	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	136	first strand
Strand 2	E	17	20	parallel
Strand 3	E	189	193	parallel
Strand 4	E	208	212	parallel
Strand 5	E	234	236	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	E	116	117	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	136	first strand
Strand 2	F	17	20	parallel
Strand 3	F	189	193	parallel
Strand 4	F	208	212	parallel
Strand 5	F	234	236	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	F	116	117	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	136	first strand
Strand 2	G	17	20	parallel
Strand 3	G	189	193	parallel
Strand 4	G	208	212	parallel
Strand 5	G	234	236	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	28	first strand
Strand 2	G	116	117	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	136	first strand
Strand 2	H	17	20	parallel
Strand 3	H	189	193	parallel
Strand 4	H	208	212	parallel
Strand 5	H	234	236	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3UMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
3UMG