Analysis of interatomic Contacts of Structural Units in PDB entry:
3UMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UMP entry

There are 2 chains in PDB entry 3UMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 309
B
 MET 1SER 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3UMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 51Right-handed alpha
Helix 2
2
A
62 76Right-handed alpha
Helix 3
3
A
114 127Right-handed alpha
Helix 4
4
A
145 159Right-handed alpha
Helix 5
5
A
168 177Right-handed alpha
Helix 6
6
A
187 195Right-handed alpha
Helix 7
7
A
203 215Right-handed alpha
Helix 8
8
A
226 228Right-handed 310
Helix 9
9
A
253 268Right-handed alpha
Helix 10
10
A
271 288Right-handed alpha
Helix 11
11
A
296 309Right-handed alpha
Helix 12
12
B
39 51Right-handed alpha
Helix 13
13
B
62 76Right-handed alpha
Helix 14
14
B
114 126Right-handed alpha
Helix 15
15
B
145 159Right-handed alpha
Helix 16
16
B
168 176Right-handed alpha
Helix 17
17
B
187 195Right-handed alpha
Helix 18
18
B
203 215Right-handed alpha
Helix 19
19
B
226 228Right-handed 310
Helix 20
20
B
253 268Right-handed alpha
Helix 21
21
B
271 288Right-handed alpha
Helix 22
22
B
296 308Right-handed alpha
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There are 6 sheets in PDB entry 3UMP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
55 61parallel
Strand 3
A
4 7parallel
Strand 4
A
133 137parallel
Strand 5
A
162 166parallel
Strand 6
A
183 184parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
93 97parallel
Strand 4
A
103 107anti-parallel
Strand 5
B
27 29parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
B
103 107parallel
Strand 3
B
93 97anti-parallel
Strand 4
B
12 19parallel
Strand 5
B
34 38anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
230 233anti-parallel
Strand 3
A
238 241anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 84first strand
Strand 2
B
56 61parallel
Strand 3
B
4 7parallel
Strand 4
B
133 137parallel
Strand 5
B
162 166parallel
Strand 6
B
183 184parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 224first strand
Strand 2
B
230 233anti-parallel
Strand 3
B
238 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il